Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.47■□□□□ 0.87
SOX3P41225 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
SOX3P41225 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.47■□□□□ 0.87
SOX3P41225 RASA4CP-201ENST00000424092 1398 ntBASIC20.46■□□□□ 0.87
SOX3P41225 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
SOX3P41225 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.46■□□□□ 0.87
SOX3P41225 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.46■□□□□ 0.87
SOX3P41225 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SOX3P41225 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.46■□□□□ 0.87
SOX3P41225 BX842568.3-201ENST00000418104 571 ntBASIC20.46■□□□□ 0.87
SOX3P41225 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.46■□□□□ 0.87
SOX3P41225 CA15P2-201ENST00000611168 834 ntBASIC20.46■□□□□ 0.87
SOX3P41225 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.46■□□□□ 0.87
SOX3P41225 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
SOX3P41225 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.45■□□□□ 0.86
SOX3P41225 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.45■□□□□ 0.86
SOX3P41225 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.45■□□□□ 0.86
SOX3P41225 ZNRF2P3-201ENST00000424200 374 ntBASIC20.45■□□□□ 0.86
SOX3P41225 AC105265.2-201ENST00000467189 838 ntBASIC20.45■□□□□ 0.86
SOX3P41225 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.45■□□□□ 0.86
SOX3P41225 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.45■□□□□ 0.86
SOX3P41225 AC233992.3-201ENST00000607491 485 ntBASIC20.45■□□□□ 0.86
SOX3P41225 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
SOX3P41225 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
SOX3P41225 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
SOX3P41225 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
SOX3P41225 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.44■□□□□ 0.86
SOX3P41225 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.44■□□□□ 0.86
SOX3P41225 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.44■□□□□ 0.86
SOX3P41225 SLC47A1P1-202ENST00000449666 945 ntBASIC20.44■□□□□ 0.86
SOX3P41225 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
SOX3P41225 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
SOX3P41225 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 AC092068.2-201ENST00000590491 1708 ntBASIC20.44■□□□□ 0.86
SOX3P41225 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
SOX3P41225 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC20.43■□□□□ 0.86
SOX3P41225 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SOX3P41225 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.43■□□□□ 0.86
SOX3P41225 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.43■□□□□ 0.86
SOX3P41225 STOX2-205ENST00000513034 807 ntTSL 3 BASIC20.43■□□□□ 0.86
SOX3P41225 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.43■□□□□ 0.86
SOX3P41225 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
SOX3P41225 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.43■□□□□ 0.86
SOX3P41225 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.43■□□□□ 0.86
SOX3P41225 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
SOX3P41225 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.43■□□□□ 0.86
SOX3P41225 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
SOX3P41225 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.42■□□□□ 0.86
SOX3P41225 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC20.42■□□□□ 0.86
SOX3P41225 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
SOX3P41225 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
SOX3P41225 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
SOX3P41225 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC20.41■□□□□ 0.86
SOX3P41225 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 MIR935-201ENST00000401179 91 ntBASIC20.41■□□□□ 0.86
SOX3P41225 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC20.41■□□□□ 0.86
SOX3P41225 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
SOX3P41225 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
SOX3P41225 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms