Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC21.19■□□□□ 0.98
PCNAP12004 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.19■□□□□ 0.98
PCNAP12004 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCNAP12004 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PCNAP12004 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.18■□□□□ 0.98
PCNAP12004 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCNAP12004 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PCNAP12004 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
PCNAP12004 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.17■□□□□ 0.98
PCNAP12004 AL499627.2-201ENST00000606283 725 ntBASIC21.17■□□□□ 0.98
PCNAP12004 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC21.17■□□□□ 0.98
PCNAP12004 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.17■□□□□ 0.98
PCNAP12004 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PCNAP12004 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.17■□□□□ 0.98
PCNAP12004 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCNAP12004 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.16■□□□□ 0.98
PCNAP12004 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 LINC01960-201ENST00000563759 1884 ntBASIC21.16■□□□□ 0.98
PCNAP12004 ECEL1P1-201ENST00000373592 1742 ntBASIC21.16■□□□□ 0.98
PCNAP12004 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
PCNAP12004 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.16■□□□□ 0.98
PCNAP12004 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC21.16■□□□□ 0.98
PCNAP12004 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 MIR4466-201ENST00000606121 54 ntBASIC21.16■□□□□ 0.98
PCNAP12004 AC131212.1-201ENST00000613771 668 ntBASIC21.16■□□□□ 0.98
PCNAP12004 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCNAP12004 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCNAP12004 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
PCNAP12004 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC21.15■□□□□ 0.98
PCNAP12004 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCNAP12004 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC21.15■□□□□ 0.98
PCNAP12004 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.15■□□□□ 0.98
PCNAP12004 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC21.15■□□□□ 0.98
PCNAP12004 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCNAP12004 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC21.15■□□□□ 0.98
PCNAP12004 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC21.15■□□□□ 0.98
PCNAP12004 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC21.15■□□□□ 0.98
PCNAP12004 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
PCNAP12004 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PCNAP12004 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCNAP12004 AC007375.3-201ENST00000600936 2314 ntBASIC21.15■□□□□ 0.98
PCNAP12004 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PCNAP12004 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
PCNAP12004 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
PCNAP12004 AC131281.2-201ENST00000520478 145 ntBASIC21.14■□□□□ 0.97
PCNAP12004 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
PCNAP12004 AC087742.1-201ENST00000575880 1738 ntBASIC21.14■□□□□ 0.97
PCNAP12004 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCNAP12004 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCNAP12004 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
PCNAP12004 AC133637.1-201ENST00000624115 1537 ntBASIC21.14■□□□□ 0.97
PCNAP12004 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PCNAP12004 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
PCNAP12004 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.13■□□□□ 0.97
PCNAP12004 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
PCNAP12004 AC127496.7-201ENST00000625110 1798 ntBASIC21.13■□□□□ 0.97
PCNAP12004 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCNAP12004 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
PCNAP12004 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC21.13■□□□□ 0.97
PCNAP12004 AC092171.4-201ENST00000609130 632 ntBASIC21.13■□□□□ 0.97
PCNAP12004 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.13■□□□□ 0.97
PCNAP12004 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCNAP12004 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms