Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 ESRRAP2-201ENST00000418437 1549 ntBASIC28.25■■■□□ 2.11
PTCD1O75127 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC28.25■■■□□ 2.11
PTCD1O75127 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC28.25■■■□□ 2.11
PTCD1O75127 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC28.25■■■□□ 2.11
PTCD1O75127 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC28.25■■■□□ 2.11
PTCD1O75127 USP45-205ENST00000472914 1617 ntTSL 5 BASIC28.25■■■□□ 2.11
PTCD1O75127 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PTCD1O75127 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PTCD1O75127 AC006970.2-201ENST00000450065 779 ntBASIC28.24■■■□□ 2.11
PTCD1O75127 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.24■■■□□ 2.11
PTCD1O75127 AC079140.4-201ENST00000507448 529 ntBASIC28.24■■■□□ 2.11
PTCD1O75127 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC28.24■■■□□ 2.11
PTCD1O75127 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 SPI1-203ENST00000533030 661 ntTSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 EMC9-206ENST00000560403 872 ntTSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 AC011767.1-201ENST00000617410 1153 ntBASIC28.24■■■□□ 2.11
PTCD1O75127 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC28.24■■■□□ 2.11
PTCD1O75127 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
PTCD1O75127 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC28.24■■■□□ 2.11
PTCD1O75127 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PTCD1O75127 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC28.23■■■□□ 2.11
PTCD1O75127 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC28.23■■■□□ 2.11
PTCD1O75127 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC28.23■■■□□ 2.11
PTCD1O75127 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PTCD1O75127 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
PTCD1O75127 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC28.22■■■□□ 2.11
PTCD1O75127 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
PTCD1O75127 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC28.22■■■□□ 2.11
PTCD1O75127 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PTCD1O75127 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PTCD1O75127 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
PTCD1O75127 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC28.21■■■□□ 2.11
PTCD1O75127 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC28.21■■■□□ 2.11
PTCD1O75127 CPT2-209ENST00000636935 803 ntTSL 5 BASIC28.21■■■□□ 2.11
PTCD1O75127 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC28.21■■■□□ 2.11
PTCD1O75127 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
PTCD1O75127 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC28.2■■■□□ 2.11
PTCD1O75127 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
PTCD1O75127 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
PTCD1O75127 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC28.19■■■□□ 2.1
PTCD1O75127 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC28.19■■■□□ 2.1
PTCD1O75127 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC28.19■■■□□ 2.1
PTCD1O75127 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 AL355802.2-201ENST00000402069 882 ntBASIC28.19■■■□□ 2.1
PTCD1O75127 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC28.19■■■□□ 2.1
PTCD1O75127 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC28.19■■■□□ 2.1
PTCD1O75127 AL109923.1-201ENST00000618799 583 ntBASIC28.19■■■□□ 2.1
PTCD1O75127 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
PTCD1O75127 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
PTCD1O75127 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
PTCD1O75127 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PTCD1O75127 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC28.18■■■□□ 2.1
PTCD1O75127 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PTCD1O75127 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PTCD1O75127 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
PTCD1O75127 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
PTCD1O75127 PREB-202ENST00000406567 1910 ntTSL 5 BASIC28.18■■■□□ 2.1
PTCD1O75127 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
PTCD1O75127 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PTCD1O75127 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC28.17■■■□□ 2.1
PTCD1O75127 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC28.17■■■□□ 2.1
PTCD1O75127 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC28.17■■■□□ 2.1
PTCD1O75127 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC28.17■■■□□ 2.1
PTCD1O75127 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC28.17■■■□□ 2.1
PTCD1O75127 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC28.17■■■□□ 2.1
PTCD1O75127 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PTCD1O75127 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PTCD1O75127 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.17■■■□□ 2.1
PTCD1O75127 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC28.17■■■□□ 2.1
PTCD1O75127 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC28.16■■■□□ 2.1
PTCD1O75127 NCF1B-203ENST00000435988 1254 ntBASIC28.16■■■□□ 2.1
PTCD1O75127 WT1-AS_3.1-201ENST00000613262 234 ntBASIC28.16■■■□□ 2.1
PTCD1O75127 DUSP8P3-201ENST00000399571 1760 ntBASIC28.16■■■□□ 2.1
PTCD1O75127 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
PTCD1O75127 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC28.16■■■□□ 2.1
PTCD1O75127 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC28.16■■■□□ 2.1
PTCD1O75127 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC28.15■■■□□ 2.1
PTCD1O75127 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PTCD1O75127 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PTCD1O75127 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC28.15■■■□□ 2.1
PTCD1O75127 MIR663A-201ENST00000385250 93 ntBASIC28.15■■■□□ 2.1
PTCD1O75127 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC28.15■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms