Protein–RNA interactions for Protein: O60885

BRD4, Bromodomain-containing protein 4, humanhuman

Predicted RBP Predictions only

Length 1,362 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRD4O60885 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
BRD4O60885 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC30.41■■■□□ 2.46
BRD4O60885 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
BRD4O60885 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC30.41■■■□□ 2.46
BRD4O60885 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
BRD4O60885 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
BRD4O60885 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC30.41■■■□□ 2.46
BRD4O60885 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC30.41■■■□□ 2.46
BRD4O60885 AC105233.4-201ENST00000642045 216 ntBASIC30.41■■■□□ 2.46
BRD4O60885 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
BRD4O60885 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC30.4■■■□□ 2.46
BRD4O60885 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC30.4■■■□□ 2.46
BRD4O60885 AC004911.1-201ENST00000416316 871 ntBASIC30.4■■■□□ 2.46
BRD4O60885 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
BRD4O60885 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
BRD4O60885 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC30.39■■■□□ 2.45
BRD4O60885 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC30.39■■■□□ 2.45
BRD4O60885 TPRG1LP1-201ENST00000598702 760 ntBASIC30.39■■■□□ 2.45
BRD4O60885 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC30.39■■■□□ 2.45
BRD4O60885 AC012676.1-201ENST00000574705 1949 ntBASIC30.38■■■□□ 2.45
BRD4O60885 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC30.38■■■□□ 2.45
BRD4O60885 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC30.38■■■□□ 2.45
BRD4O60885 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC30.38■■■□□ 2.45
BRD4O60885 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC30.38■■■□□ 2.45
BRD4O60885 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC30.38■■■□□ 2.45
BRD4O60885 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC30.38■■■□□ 2.45
BRD4O60885 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC30.38■■■□□ 2.45
BRD4O60885 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC30.38■■■□□ 2.45
BRD4O60885 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC30.37■■■□□ 2.45
BRD4O60885 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC30.37■■■□□ 2.45
BRD4O60885 GXYLT1P2-201ENST00000433312 1230 ntBASIC30.37■■■□□ 2.45
BRD4O60885 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC30.37■■■□□ 2.45
BRD4O60885 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC30.37■■■□□ 2.45
BRD4O60885 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC30.37■■■□□ 2.45
BRD4O60885 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC30.37■■■□□ 2.45
BRD4O60885 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC30.37■■■□□ 2.45
BRD4O60885 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC30.36■■■□□ 2.45
BRD4O60885 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.36■■■□□ 2.45
BRD4O60885 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC30.36■■■□□ 2.45
BRD4O60885 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC30.36■■■□□ 2.45
BRD4O60885 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC30.36■■■□□ 2.45
BRD4O60885 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC30.36■■■□□ 2.45
BRD4O60885 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC30.36■■■□□ 2.45
BRD4O60885 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC30.35■■■□□ 2.45
BRD4O60885 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
BRD4O60885 C9orf163-202ENST00000624034 2573 ntBASIC30.35■■■□□ 2.45
BRD4O60885 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC30.35■■■□□ 2.45
BRD4O60885 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.35■■■□□ 2.45
BRD4O60885 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC30.34■■■□□ 2.45
BRD4O60885 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 ID1-201ENST00000376105 1233 ntBASIC30.34■■■□□ 2.45
BRD4O60885 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC30.34■■■□□ 2.45
BRD4O60885 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC30.34■■■□□ 2.45
BRD4O60885 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
BRD4O60885 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC30.33■■■□□ 2.45
BRD4O60885 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC30.33■■■□□ 2.45
BRD4O60885 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC30.33■■■□□ 2.45
BRD4O60885 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.33■■■□□ 2.45
BRD4O60885 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC30.33■■■□□ 2.45
BRD4O60885 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC30.32■■■□□ 2.45
BRD4O60885 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC30.32■■■□□ 2.44
BRD4O60885 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC30.32■■■□□ 2.44
BRD4O60885 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC30.32■■■□□ 2.44
BRD4O60885 AC006015.1-201ENST00000429970 570 ntBASIC30.32■■■□□ 2.44
BRD4O60885 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.44
BRD4O60885 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC30.32■■■□□ 2.44
BRD4O60885 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC30.32■■■□□ 2.44
BRD4O60885 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC30.32■■■□□ 2.44
BRD4O60885 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC30.31■■■□□ 2.44
BRD4O60885 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC30.31■■■□□ 2.44
BRD4O60885 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
BRD4O60885 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC30.31■■■□□ 2.44
BRD4O60885 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC30.31■■■□□ 2.44
BRD4O60885 KRT18P61-201ENST00000585825 1298 ntBASIC30.31■■■□□ 2.44
BRD4O60885 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC30.31■■■□□ 2.44
BRD4O60885 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC30.31■■■□□ 2.44
BRD4O60885 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC30.31■■■□□ 2.44
BRD4O60885 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC30.31■■■□□ 2.44
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms