Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC3O43542 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
XRCC3O43542 AC129492.7-201ENST00000622992 756 ntBASIC18.68■□□□□ 0.58
XRCC3O43542 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
XRCC3O43542 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.68■□□□□ 0.58
XRCC3O43542 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
XRCC3O43542 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
XRCC3O43542 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
XRCC3O43542 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC18.67■□□□□ 0.58
XRCC3O43542 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC3O43542 MIR4281-201ENST00000580852 62 ntBASIC18.67■□□□□ 0.58
XRCC3O43542 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
XRCC3O43542 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC3O43542 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.67■□□□□ 0.58
XRCC3O43542 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
XRCC3O43542 REST-206ENST00000612429 1376 ntTSL 5 BASIC18.67■□□□□ 0.58
XRCC3O43542 REST-207ENST00000616975 1370 ntTSL 5 BASIC18.67■□□□□ 0.58
XRCC3O43542 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
XRCC3O43542 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
XRCC3O43542 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.66■□□□□ 0.58
XRCC3O43542 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC18.66■□□□□ 0.58
XRCC3O43542 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC18.66■□□□□ 0.58
XRCC3O43542 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
XRCC3O43542 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.66■□□□□ 0.58
XRCC3O43542 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
XRCC3O43542 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.66■□□□□ 0.58
XRCC3O43542 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC3O43542 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 KRT18P24-201ENST00000344739 1156 ntBASIC18.65■□□□□ 0.58
XRCC3O43542 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
XRCC3O43542 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.65■□□□□ 0.58
XRCC3O43542 THA1P-201ENST00000590384 1145 ntBASIC18.65■□□□□ 0.58
XRCC3O43542 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
XRCC3O43542 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC18.65■□□□□ 0.58
XRCC3O43542 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
XRCC3O43542 Z98882.1-201ENST00000622160 2253 ntBASIC18.65■□□□□ 0.58
XRCC3O43542 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC18.65■□□□□ 0.58
XRCC3O43542 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
XRCC3O43542 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.58
XRCC3O43542 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC18.64■□□□□ 0.58
XRCC3O43542 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.64■□□□□ 0.57
XRCC3O43542 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC3O43542 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC3O43542 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC18.64■□□□□ 0.57
XRCC3O43542 AC009086.3-201ENST00000623486 1008 ntBASIC18.64■□□□□ 0.57
XRCC3O43542 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC3O43542 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
XRCC3O43542 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
XRCC3O43542 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC18.63■□□□□ 0.57
XRCC3O43542 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC18.63■□□□□ 0.57
XRCC3O43542 CA15P2-201ENST00000611168 834 ntBASIC18.63■□□□□ 0.57
XRCC3O43542 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
XRCC3O43542 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.63■□□□□ 0.57
XRCC3O43542 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.63■□□□□ 0.57
XRCC3O43542 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
XRCC3O43542 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms