Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDCBPO00560 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDCBPO00560 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDCBPO00560 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SDCBPO00560 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDCBPO00560 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
SDCBPO00560 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC18.51■□□□□ 0.55
SDCBPO00560 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.51■□□□□ 0.55
SDCBPO00560 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SDCBPO00560 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.5■□□□□ 0.55
SDCBPO00560 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDCBPO00560 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC18.5■□□□□ 0.55
SDCBPO00560 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
SDCBPO00560 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SDCBPO00560 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDCBPO00560 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDCBPO00560 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
SDCBPO00560 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC18.5■□□□□ 0.55
SDCBPO00560 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
SDCBPO00560 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.49■□□□□ 0.55
SDCBPO00560 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
SDCBPO00560 AC144652.1-201ENST00000609974 1624 ntBASIC18.49■□□□□ 0.55
SDCBPO00560 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.49■□□□□ 0.55
SDCBPO00560 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 TSPY9P-201ENST00000440215 945 ntBASIC18.49■□□□□ 0.55
SDCBPO00560 TSPY11P-201ENST00000442607 1045 ntBASIC18.49■□□□□ 0.55
SDCBPO00560 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC18.49■□□□□ 0.55
SDCBPO00560 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.49■□□□□ 0.55
SDCBPO00560 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.49■□□□□ 0.55
SDCBPO00560 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SDCBPO00560 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.49■□□□□ 0.55
SDCBPO00560 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
SDCBPO00560 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC18.49■□□□□ 0.55
SDCBPO00560 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 AC026310.3-201ENST00000625186 2373 ntBASIC18.48■□□□□ 0.55
SDCBPO00560 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SDCBPO00560 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.48■□□□□ 0.55
SDCBPO00560 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SDCBPO00560 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC18.48■□□□□ 0.55
SDCBPO00560 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.48■□□□□ 0.55
SDCBPO00560 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SDCBPO00560 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC18.47■□□□□ 0.55
SDCBPO00560 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC18.47■□□□□ 0.55
SDCBPO00560 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SDCBPO00560 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SDCBPO00560 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 AC010997.5-201ENST00000609182 354 ntBASIC18.47■□□□□ 0.55
SDCBPO00560 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.47■□□□□ 0.55
SDCBPO00560 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.47■□□□□ 0.55
SDCBPO00560 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.47■□□□□ 0.55
SDCBPO00560 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
SDCBPO00560 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SDCBPO00560 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC18.46■□□□□ 0.55
SDCBPO00560 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.46■□□□□ 0.55
SDCBPO00560 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SDCBPO00560 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.46■□□□□ 0.54
SDCBPO00560 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.54
SDCBPO00560 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.45■□□□□ 0.54
SDCBPO00560 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.45■□□□□ 0.54
SDCBPO00560 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
SDCBPO00560 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC18.45■□□□□ 0.54
SDCBPO00560 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SDCBPO00560 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms