Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AL162430.1-201ENST00000480705 870 ntBASIC22.32■■□□□ 1.16
CBX4O00257 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC22.32■■□□□ 1.16
CBX4O00257 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC22.32■■□□□ 1.16
CBX4O00257 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CBX4O00257 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CBX4O00257 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC22.31■■□□□ 1.16
CBX4O00257 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
CBX4O00257 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CBX4O00257 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC22.31■■□□□ 1.16
CBX4O00257 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CBX4O00257 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22.31■■□□□ 1.16
CBX4O00257 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.31■■□□□ 1.16
CBX4O00257 MIR572-201ENST00000384983 95 ntBASIC22.31■■□□□ 1.16
CBX4O00257 AC010141.3-201ENST00000456659 717 ntBASIC22.31■■□□□ 1.16
CBX4O00257 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CBX4O00257 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
CBX4O00257 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
CBX4O00257 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
CBX4O00257 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC22.31■■□□□ 1.16
CBX4O00257 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CBX4O00257 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 PLD4-205ENST00000553861 667 ntTSL 2 BASIC22.3■■□□□ 1.16
CBX4O00257 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CBX4O00257 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
CBX4O00257 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC22.29■■□□□ 1.16
CBX4O00257 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CBX4O00257 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CBX4O00257 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.29■■□□□ 1.16
CBX4O00257 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC22.29■■□□□ 1.16
CBX4O00257 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC22.29■■□□□ 1.16
CBX4O00257 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CBX4O00257 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CBX4O00257 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CBX4O00257 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CBX4O00257 LHPP-203ENST00000392757 840 ntTSL 3 BASIC22.28■■□□□ 1.16
CBX4O00257 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC22.28■■□□□ 1.16
CBX4O00257 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CBX4O00257 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CBX4O00257 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CBX4O00257 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CBX4O00257 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
CBX4O00257 NME4-202ENST00000382940 766 ntTSL 3 BASIC22.27■■□□□ 1.16
CBX4O00257 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.27■■□□□ 1.16
CBX4O00257 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.27■■□□□ 1.16
CBX4O00257 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CBX4O00257 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC22.27■■□□□ 1.16
CBX4O00257 NME4-211ENST00000620944 1193 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC22.27■■□□□ 1.16
CBX4O00257 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC22.27■■□□□ 1.16
CBX4O00257 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC22.27■■□□□ 1.15
CBX4O00257 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CBX4O00257 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.26■■□□□ 1.15
CBX4O00257 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22.26■■□□□ 1.15
CBX4O00257 JTB-203ENST00000368589 1216 ntTSL 2 BASIC22.26■■□□□ 1.15
CBX4O00257 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
CBX4O00257 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
CBX4O00257 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC22.26■■□□□ 1.15
CBX4O00257 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
CBX4O00257 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
CBX4O00257 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CBX4O00257 C1orf229-201ENST00000623686 2258 ntBASIC22.26■■□□□ 1.15
CBX4O00257 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.25■■□□□ 1.15
CBX4O00257 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC22.25■■□□□ 1.15
CBX4O00257 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC22.25■■□□□ 1.15
CBX4O00257 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.25■■□□□ 1.15
CBX4O00257 AC105233.4-201ENST00000642045 216 ntBASIC22.25■■□□□ 1.15
CBX4O00257 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.25■■□□□ 1.15
CBX4O00257 OXCT2P1-201ENST00000447263 1535 ntBASIC22.25■■□□□ 1.15
CBX4O00257 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
CBX4O00257 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.25■■□□□ 1.15
CBX4O00257 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
CBX4O00257 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC22.24■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms