Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV1-1A0A0B4J248 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC17.08■□□□□ 0.33
TRAV1-1A0A0B4J248 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TRAV1-1A0A0B4J248 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TRAV1-1A0A0B4J248 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
TRAV1-1A0A0B4J248 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 FEM1AP1-201ENST00000431297 1995 ntBASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 LINC01960-201ENST00000563759 1884 ntBASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 NKX2-5-204ENST00000521848 1027 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAV1-1A0A0B4J248 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAV1-1A0A0B4J248 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAV1-1A0A0B4J248 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 METRNL-202ENST00000570778 967 ntTSL 5 BASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 AC011551.1-201ENST00000614101 683 ntBASIC17.03■□□□□ 0.32
TRAV1-1A0A0B4J248 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms