Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 AC087742.1-201ENST00000575880 1738 ntBASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 SRD5A1P1-201ENST00000442297 786 ntBASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 AC242852.2-201ENST00000615738 1807 ntBASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA11Q9Y5H2 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 AC099791.2-201ENST00000605725 427 ntBASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 AC092171.4-201ENST00000609130 632 ntBASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 LINC01960-201ENST00000563759 1884 ntBASIC21.18■□□□□ 0.98
PCDHGA11Q9Y5H2 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 AL512631.2-201ENST00000604634 923 ntBASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 AC007375.3-201ENST00000600936 2314 ntBASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA11Q9Y5H2 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA11Q9Y5H2 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.15■□□□□ 0.98
PCDHGA11Q9Y5H2 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
PCDHGA11Q9Y5H2 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDHGA11Q9Y5H2 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.14■□□□□ 0.98
PCDHGA11Q9Y5H2 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PCDHGA11Q9Y5H2 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 AC006455.2-201ENST00000429931 906 ntBASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 pRNA.6-201ENST00000610482 90 ntBASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 pRNA.5-201ENST00000612139 90 ntBASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 pRNA.11-201ENST00000618423 90 ntBASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 pRNA.13-201ENST00000619112 90 ntBASIC21.13■□□□□ 0.97
PCDHGA11Q9Y5H2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms