Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
ATG4BQ9Y4P1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 FZD8-201ENST00000374694 4030 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 AC010525.1-201ENST00000585559 441 ntBASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 GUSBP5-202ENST00000510805 1989 ntBASIC20.74■□□□□ 0.91
ATG4BQ9Y4P1 AL117328.2-201ENST00000624617 1940 ntBASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 AC127496.7-201ENST00000625110 1798 ntBASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 AC135279.3-201ENST00000610945 1311 ntBASIC20.73■□□□□ 0.91
ATG4BQ9Y4P1 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 MIR4767-201ENST00000582827 78 ntBASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 AL031602.1-201ENST00000633169 911 ntBASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
ATG4BQ9Y4P1 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 MIR638-201ENST00000385237 100 ntBASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
ATG4BQ9Y4P1 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 SLC47A1P1-202ENST00000449666 945 ntBASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 PBX2P1-201ENST00000493219 1291 ntBASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 AC080038.3-201ENST00000623346 1952 ntBASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
ATG4BQ9Y4P1 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 AC019069.1-201ENST00000610008 1333 ntBASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
ATG4BQ9Y4P1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 CA15P2-201ENST00000611168 834 ntBASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 AC106739.1-201ENST00000617035 715 ntBASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ATG4BQ9Y4P1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms