Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
ZCCHC3Q9NUD5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
ZCCHC3Q9NUD5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
ZCCHC3Q9NUD5 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 pRNA.6-201ENST00000610482 90 ntBASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 pRNA.5-201ENST00000612139 90 ntBASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 pRNA.11-201ENST00000618423 90 ntBASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 pRNA.13-201ENST00000619112 90 ntBASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
ZCCHC3Q9NUD5 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 PKD1P6-201ENST00000343738 4769 ntBASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 AL512631.2-201ENST00000604634 923 ntBASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
ZCCHC3Q9NUD5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 LINC00565-201ENST00000562710 2331 ntBASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 AC092053.2-201ENST00000640557 1818 ntBASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 AC133637.1-201ENST00000624115 1537 ntBASIC20.53■□□□□ 0.88
ZCCHC3Q9NUD5 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
ZCCHC3Q9NUD5 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 TRIR-202ENST00000588213 841 ntTSL 3 BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 AC092171.4-201ENST00000609130 632 ntBASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
ZCCHC3Q9NUD5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
ZCCHC3Q9NUD5 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms