Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.4■□□□□ 0.86
VCX3AQ9NNX9 CD37-213ENST00000598095 1598 ntTSL 2 BASIC20.4■□□□□ 0.86
VCX3AQ9NNX9 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCX3AQ9NNX9 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCX3AQ9NNX9 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
VCX3AQ9NNX9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VCX3AQ9NNX9 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
VCX3AQ9NNX9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
VCX3AQ9NNX9 MDFIC-206ENST00000448022 484 ntTSL 2 BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 FAM99A-202ENST00000538190 1989 ntBASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
VCX3AQ9NNX9 VEGFA-209ENST00000425836 1575 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 BARX1-202ENST00000401724 1323 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 AC044849.2-201ENST00000606596 710 ntBASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
VCX3AQ9NNX9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 AL020996.1-203ENST00000536896 2307 ntBASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 DUX4L29-201ENST00000425409 679 ntBASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 BOD1-206ENST00000480951 814 ntTSL 2 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 PFN2-211ENST00000489155 636 ntTSL 4 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
VCX3AQ9NNX9 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.36■□□□□ 0.85
VCX3AQ9NNX9 TMEM198-202ENST00000373883 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.35■□□□□ 0.85
VCX3AQ9NNX9 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 AC087741.3-201ENST00000624270 1347 ntBASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 MIR3960-201ENST00000583311 91 ntBASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 AP006261.1-201ENST00000584783 668 ntBASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
VCX3AQ9NNX9 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
VCX3AQ9NNX9 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 143.6 ms