Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 CAMK1-201ENST00000256460 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
CFAP54Q96N23 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.74■■□□□ 1.07
CFAP54Q96N23 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.73■■□□□ 1.07
CFAP54Q96N23 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.73■■□□□ 1.07
CFAP54Q96N23 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 MIR4497-201ENST00000583208 89 ntBASIC21.73■■□□□ 1.07
CFAP54Q96N23 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.73■■□□□ 1.07
CFAP54Q96N23 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
CFAP54Q96N23 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
CFAP54Q96N23 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
CFAP54Q96N23 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CFAP54Q96N23 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CFAP54Q96N23 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 MIR4758-201ENST00000577688 71 ntBASIC21.72■■□□□ 1.07
CFAP54Q96N23 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.72■■□□□ 1.07
CFAP54Q96N23 FADD-201ENST00000301838 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
CFAP54Q96N23 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 OR2I1P-207ENST00000453522 948 ntBASIC21.71■■□□□ 1.07
CFAP54Q96N23 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CFAP54Q96N23 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC21.71■■□□□ 1.07
CFAP54Q96N23 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
CFAP54Q96N23 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.7■■□□□ 1.07
CFAP54Q96N23 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.7■■□□□ 1.07
CFAP54Q96N23 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC21.7■■□□□ 1.06
CFAP54Q96N23 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
CFAP54Q96N23 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CFAP54Q96N23 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
CFAP54Q96N23 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
CFAP54Q96N23 TRIOBP-203ENST00000403663 2324 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
CFAP54Q96N23 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.7■■□□□ 1.06
CFAP54Q96N23 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
CFAP54Q96N23 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CFAP54Q96N23 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CFAP54Q96N23 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC21.69■■□□□ 1.06
CFAP54Q96N23 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CFAP54Q96N23 AC092803.2-201ENST00000564287 1899 ntBASIC21.68■■□□□ 1.06
CFAP54Q96N23 RPS20-210ENST00000523936 899 ntTSL 2 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 AL022069.1-201ENST00000568025 1636 ntBASIC21.68■■□□□ 1.06
CFAP54Q96N23 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 FEZ2-204ENST00000405912 1931 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CFAP54Q96N23 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CFAP54Q96N23 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.68■■□□□ 1.06
CFAP54Q96N23 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.67■■□□□ 1.06
CFAP54Q96N23 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC21.67■■□□□ 1.06
CFAP54Q96N23 UNC93B5-201ENST00000530315 699 ntBASIC21.67■■□□□ 1.06
CFAP54Q96N23 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC21.67■■□□□ 1.06
CFAP54Q96N23 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
CFAP54Q96N23 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CFAP54Q96N23 RARA-203ENST00000394086 2008 ntTSL 2 BASIC21.67■■□□□ 1.06
CFAP54Q96N23 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CFAP54Q96N23 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
CFAP54Q96N23 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms