Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.41■□□□□ 0.86
CLIP4Q8N3C7 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 DUX4L4-201ENST00000566884 1269 ntBASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.4■□□□□ 0.86
CLIP4Q8N3C7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC20.39■□□□□ 0.86
CLIP4Q8N3C7 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLIP4Q8N3C7 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.86
CLIP4Q8N3C7 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 AP001267.3-203ENST00000554407 579 ntTSL 2 BASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 AC127496.7-201ENST00000625110 1798 ntBASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 AC087742.1-201ENST00000575880 1738 ntBASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
CLIP4Q8N3C7 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 AC137767.1-201ENST00000602918 1920 ntBASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.38■□□□□ 0.85
CLIP4Q8N3C7 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 AL035685.1-201ENST00000636663 812 ntBASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 C17orf82-201ENST00000623772 1530 ntBASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 AC242852.2-201ENST00000615738 1807 ntBASIC20.37■□□□□ 0.85
CLIP4Q8N3C7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 MIR6724-1-201ENST00000616420 92 ntBASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 MIR6724-2-201ENST00000616483 92 ntBASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 MIR6724-4-201ENST00000617390 92 ntBASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 MIR6724-3-201ENST00000622482 92 ntBASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 AL137060.1-201ENST00000618151 2648 ntBASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.36■□□□□ 0.85
CLIP4Q8N3C7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CLIP4Q8N3C7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP4Q8N3C7 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP4Q8N3C7 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP4Q8N3C7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP4Q8N3C7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CLIP4Q8N3C7 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms