Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
CSPG4Q6UVK1 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 AF201337.1-201ENST00000520239 748 ntBASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 DUX4L16-201ENST00000555130 1264 ntBASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 PABPN1-202ENST00000397276 2768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 TBCB-214ENST00000629269 413 ntTSL 5 BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CSPG4Q6UVK1 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 PRORSD1P-201ENST00000295112 541 ntBASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.17■□□□□ 0.5
CSPG4Q6UVK1 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.16■□□□□ 0.5
CSPG4Q6UVK1 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 CNN2P6-201ENST00000439038 900 ntBASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.15■□□□□ 0.5
CSPG4Q6UVK1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.5
CSPG4Q6UVK1 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 SLC12A2-202ENST00000343225 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 SLC29A4P1-201ENST00000398760 971 ntBASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.14■□□□□ 0.49
CSPG4Q6UVK1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 AC144652.1-201ENST00000609974 1624 ntBASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 TSPY6P-201ENST00000448518 926 ntBASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CSPG4Q6UVK1 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 SLC7A5P2-201ENST00000553010 536 ntBASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CSPG4Q6UVK1 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms