Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 UNC93B3-201ENST00000308076 687 ntBASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM40Q6P9F5 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 EP400NL-214ENST00000641289 2402 ntBASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRIM40Q6P9F5 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 AC136469.2-201ENST00000623944 1028 ntBASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC20.96■□□□□ 0.95
TRIM40Q6P9F5 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 AC096631.2-201ENST00000436136 790 ntBASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 ECEL1P1-201ENST00000373592 1742 ntBASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.95■□□□□ 0.94
TRIM40Q6P9F5 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 AL136162.1-201ENST00000607711 1078 ntBASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 PKD1P6-201ENST00000343738 4769 ntBASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 LINC00526-201ENST00000581067 1875 ntBASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.94■□□□□ 0.94
TRIM40Q6P9F5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 LINC01960-201ENST00000563759 1884 ntBASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 OR2I1P-207ENST00000453522 948 ntBASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 AC135279.3-201ENST00000610945 1311 ntBASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRIM40Q6P9F5 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms