Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
LIM2P55344 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.81■□□□□ 0.92
LIM2P55344 OR2I1P-207ENST00000453522 948 ntBASIC20.81■□□□□ 0.92
LIM2P55344 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.92
LIM2P55344 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LIM2P55344 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.81■□□□□ 0.92
LIM2P55344 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC20.81■□□□□ 0.92
LIM2P55344 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.81■□□□□ 0.92
LIM2P55344 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LIM2P55344 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC20.8■□□□□ 0.92
LIM2P55344 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
LIM2P55344 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
LIM2P55344 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.8■□□□□ 0.92
LIM2P55344 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.8■□□□□ 0.92
LIM2P55344 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
LIM2P55344 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.8■□□□□ 0.92
LIM2P55344 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIM2P55344 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.79■□□□□ 0.92
LIM2P55344 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.79■□□□□ 0.92
LIM2P55344 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.79■□□□□ 0.92
LIM2P55344 RALB-208ENST00000631312 311 ntTSL 5 BASIC20.79■□□□□ 0.92
LIM2P55344 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIM2P55344 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
LIM2P55344 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 GUSBP5-202ENST00000510805 1989 ntBASIC20.79■□□□□ 0.92
LIM2P55344 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
LIM2P55344 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
LIM2P55344 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.78■□□□□ 0.92
LIM2P55344 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIM2P55344 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIM2P55344 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
LIM2P55344 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.78■□□□□ 0.92
LIM2P55344 AC010525.1-201ENST00000585559 441 ntBASIC20.78■□□□□ 0.92
LIM2P55344 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
LIM2P55344 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.78■□□□□ 0.92
LIM2P55344 CLDN5-201ENST00000403084 2357 ntBASIC20.78■□□□□ 0.92
LIM2P55344 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.78■□□□□ 0.92
LIM2P55344 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
LIM2P55344 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
LIM2P55344 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.77■□□□□ 0.92
LIM2P55344 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
LIM2P55344 SLC47A1P1-202ENST00000449666 945 ntBASIC20.77■□□□□ 0.92
LIM2P55344 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.77■□□□□ 0.92
LIM2P55344 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
LIM2P55344 LINC01960-201ENST00000563759 1884 ntBASIC20.77■□□□□ 0.92
LIM2P55344 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
LIM2P55344 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.91
LIM2P55344 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIM2P55344 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC20.77■□□□□ 0.91
LIM2P55344 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIM2P55344 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.91
LIM2P55344 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.76■□□□□ 0.91
LIM2P55344 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
LIM2P55344 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC20.76■□□□□ 0.91
LIM2P55344 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.76■□□□□ 0.91
LIM2P55344 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.76■□□□□ 0.91
LIM2P55344 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.76■□□□□ 0.91
LIM2P55344 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 LINC00565-201ENST00000562710 2331 ntBASIC20.76■□□□□ 0.91
LIM2P55344 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
LIM2P55344 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIM2P55344 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 EDA-201ENST00000338901 1233 ntBASIC20.75■□□□□ 0.91
LIM2P55344 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.75■□□□□ 0.91
LIM2P55344 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.75■□□□□ 0.91
LIM2P55344 AC133561.4-201ENST00000566112 224 ntBASIC20.75■□□□□ 0.91
LIM2P55344 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.75■□□□□ 0.91
LIM2P55344 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
LIM2P55344 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
LIM2P55344 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
LIM2P55344 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.74■□□□□ 0.91
LIM2P55344 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
LIM2P55344 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 14.6 ms