Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CDX1P47902 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CDX1P47902 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CDX1P47902 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CDX1P47902 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CDX1P47902 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC17.7■□□□□ 0.42
CDX1P47902 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CDX1P47902 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CDX1P47902 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC17.7■□□□□ 0.42
CDX1P47902 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CDX1P47902 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CDX1P47902 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC17.69■□□□□ 0.42
CDX1P47902 RASSF1-AS1-201ENST00000629828 790 ntBASIC17.69■□□□□ 0.42
CDX1P47902 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CDX1P47902 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC17.69■□□□□ 0.42
CDX1P47902 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
CDX1P47902 AF106564.1-201ENST00000607058 2553 ntBASIC17.68■□□□□ 0.42
CDX1P47902 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CDX1P47902 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
CDX1P47902 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
CDX1P47902 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
CDX1P47902 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
CDX1P47902 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC17.68■□□□□ 0.42
CDX1P47902 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC17.67■□□□□ 0.42
CDX1P47902 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC17.67■□□□□ 0.42
CDX1P47902 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.67■□□□□ 0.42
CDX1P47902 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
CDX1P47902 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
CDX1P47902 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CDX1P47902 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX1P47902 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 SRD5A1P1-201ENST00000442297 786 ntBASIC17.66■□□□□ 0.42
CDX1P47902 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC17.66■□□□□ 0.42
CDX1P47902 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CDX1P47902 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC17.66■□□□□ 0.42
CDX1P47902 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CDX1P47902 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDX1P47902 AL139246.5-201ENST00000606645 996 ntBASIC17.65■□□□□ 0.42
CDX1P47902 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CDX1P47902 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC17.65■□□□□ 0.42
CDX1P47902 GATM-206ENST00000558336 1522 ntTSL 2 BASIC17.65■□□□□ 0.42
CDX1P47902 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDX1P47902 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
CDX1P47902 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDX1P47902 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms