Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC19.21■□□□□ 0.67
COL8A1P27658 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL8A1P27658 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.21■□□□□ 0.67
COL8A1P27658 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC19.21■□□□□ 0.67
COL8A1P27658 AC098590.1-201ENST00000468126 897 ntBASIC19.21■□□□□ 0.67
COL8A1P27658 AC079140.4-201ENST00000507448 529 ntBASIC19.21■□□□□ 0.67
COL8A1P27658 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC19.21■□□□□ 0.67
COL8A1P27658 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
COL8A1P27658 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.21■□□□□ 0.67
COL8A1P27658 MIR6089-201ENST00000616698 64 ntBASIC19.21■□□□□ 0.67
COL8A1P27658 AP006294.2-201ENST00000641667 209 ntBASIC19.21■□□□□ 0.67
COL8A1P27658 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL8A1P27658 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
COL8A1P27658 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC19.2■□□□□ 0.66
COL8A1P27658 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 DUSP5P2-201ENST00000426873 1033 ntBASIC19.2■□□□□ 0.66
COL8A1P27658 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.2■□□□□ 0.66
COL8A1P27658 AF201337.1-201ENST00000520239 748 ntBASIC19.2■□□□□ 0.66
COL8A1P27658 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.2■□□□□ 0.66
COL8A1P27658 AC105036.2-201ENST00000569468 176 ntBASIC19.2■□□□□ 0.66
COL8A1P27658 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
COL8A1P27658 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.2■□□□□ 0.66
COL8A1P27658 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC19.2■□□□□ 0.66
COL8A1P27658 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC19.19■□□□□ 0.66
COL8A1P27658 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC19.19■□□□□ 0.66
COL8A1P27658 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.19■□□□□ 0.66
COL8A1P27658 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
COL8A1P27658 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.19■□□□□ 0.66
COL8A1P27658 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
COL8A1P27658 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.18■□□□□ 0.66
COL8A1P27658 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC19.18■□□□□ 0.66
COL8A1P27658 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
COL8A1P27658 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.18■□□□□ 0.66
COL8A1P27658 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC19.18■□□□□ 0.66
COL8A1P27658 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
COL8A1P27658 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
COL8A1P27658 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC19.17■□□□□ 0.66
COL8A1P27658 PKM-203ENST00000389093 2279 ntTSL 5 BASIC19.17■□□□□ 0.66
COL8A1P27658 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL8A1P27658 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
COL8A1P27658 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.17■□□□□ 0.66
COL8A1P27658 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC19.17■□□□□ 0.66
COL8A1P27658 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC19.17■□□□□ 0.66
COL8A1P27658 AC073210.2-201ENST00000430369 194 ntBASIC19.17■□□□□ 0.66
COL8A1P27658 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.17■□□□□ 0.66
COL8A1P27658 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
COL8A1P27658 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL8A1P27658 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL8A1P27658 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
COL8A1P27658 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
COL8A1P27658 KRT72-202ENST00000354310 1764 ntTSL 2 BASIC19.16■□□□□ 0.66
COL8A1P27658 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC19.16■□□□□ 0.66
COL8A1P27658 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.16■□□□□ 0.66
COL8A1P27658 SLC7A5P1-201ENST00000568957 537 ntBASIC19.16■□□□□ 0.66
COL8A1P27658 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 UBE2DNL-204ENST00000602536 740 ntBASIC19.16■□□□□ 0.66
COL8A1P27658 AC104187.1-201ENST00000607510 612 ntBASIC19.16■□□□□ 0.66
COL8A1P27658 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
COL8A1P27658 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
COL8A1P27658 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.15■□□□□ 0.66
COL8A1P27658 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
COL8A1P27658 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
COL8A1P27658 AL158047.1-201ENST00000445918 881 ntBASIC19.15■□□□□ 0.66
COL8A1P27658 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.15■□□□□ 0.66
COL8A1P27658 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.15■□□□□ 0.66
COL8A1P27658 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.15■□□□□ 0.66
COL8A1P27658 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms