Protein–RNA interactions for Protein: P05538

HLA-DQB2, HLA class II histocompatibility antigen, DQ beta 2 chain, humanhuman

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB2P05538 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 SLC47A1P1-202ENST00000449666 945 ntBASIC22.28■■□□□ 1.16
HLA-DQB2P05538 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HLA-DQB2P05538 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 AL117328.2-201ENST00000624617 1940 ntBASIC22.27■■□□□ 1.16
HLA-DQB2P05538 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HLA-DQB2P05538 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
HLA-DQB2P05538 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 SNX3-202ENST00000349379 890 ntTSL 2 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 NALT1-201ENST00000429224 738 ntTSL 5 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 AC080038.3-201ENST00000623346 1952 ntBASIC22.26■■□□□ 1.15
HLA-DQB2P05538 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 EI24-211ENST00000534546 1544 ntTSL 2 BASIC22.26■■□□□ 1.15
HLA-DQB2P05538 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 PBX2P1-201ENST00000493219 1291 ntBASIC22.25■■□□□ 1.15
HLA-DQB2P05538 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.25■■□□□ 1.15
HLA-DQB2P05538 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 AC106739.1-201ENST00000617035 715 ntBASIC22.24■■□□□ 1.15
HLA-DQB2P05538 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
HLA-DQB2P05538 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 CA15P2-201ENST00000611168 834 ntBASIC22.23■■□□□ 1.15
HLA-DQB2P05538 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 AC137767.1-201ENST00000602918 1920 ntBASIC22.23■■□□□ 1.15
HLA-DQB2P05538 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
HLA-DQB2P05538 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC22.22■■□□□ 1.15
HLA-DQB2P05538 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 RBM38-205ENST00000440234 686 ntTSL 2 BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC22.21■■□□□ 1.15
HLA-DQB2P05538 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC22.2■■□□□ 1.15
HLA-DQB2P05538 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.15
HLA-DQB2P05538 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms