Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC13.91□□□□□ -0.18
APOBP04114 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
APOBP04114 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC13.9□□□□□ -0.18
APOBP04114 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC13.9□□□□□ -0.18
APOBP04114 SMUG1P1-201ENST00000590640 811 ntBASIC13.9□□□□□ -0.18
APOBP04114 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
APOBP04114 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC13.9□□□□□ -0.18
APOBP04114 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
APOBP04114 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
APOBP04114 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC13.9□□□□□ -0.19
APOBP04114 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC13.9□□□□□ -0.19
APOBP04114 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC13.9□□□□□ -0.19
APOBP04114 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC13.9□□□□□ -0.19
APOBP04114 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC13.89□□□□□ -0.19
APOBP04114 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC13.89□□□□□ -0.19
APOBP04114 BRI3-207ENST00000539286 699 ntTSL 2 BASIC13.89□□□□□ -0.19
APOBP04114 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 ASL-203ENST00000380839 1765 ntTSL 5 BASIC13.89□□□□□ -0.19
APOBP04114 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC13.89□□□□□ -0.19
APOBP04114 KRT18P29-201ENST00000397031 1267 ntBASIC13.89□□□□□ -0.19
APOBP04114 AC007322.4-201ENST00000509611 723 ntBASIC13.89□□□□□ -0.19
APOBP04114 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC13.89□□□□□ -0.19
APOBP04114 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC13.89□□□□□ -0.19
APOBP04114 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC13.89□□□□□ -0.19
APOBP04114 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC13.88□□□□□ -0.19
APOBP04114 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC13.88□□□□□ -0.19
APOBP04114 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC13.88□□□□□ -0.19
APOBP04114 SLC29A4P1-201ENST00000398760 971 ntBASIC13.88□□□□□ -0.19
APOBP04114 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC13.88□□□□□ -0.19
APOBP04114 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
APOBP04114 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC13.88□□□□□ -0.19
APOBP04114 AC128676.1-201ENST00000454392 318 ntBASIC13.88□□□□□ -0.19
APOBP04114 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC13.88□□□□□ -0.19
APOBP04114 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 AC087239.1-201ENST00000622671 572 ntBASIC13.88□□□□□ -0.19
APOBP04114 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
APOBP04114 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC13.88□□□□□ -0.19
APOBP04114 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC13.87□□□□□ -0.19
APOBP04114 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
APOBP04114 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
APOBP04114 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC13.87□□□□□ -0.19
APOBP04114 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC13.87□□□□□ -0.19
APOBP04114 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC13.87□□□□□ -0.19
APOBP04114 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC13.87□□□□□ -0.19
APOBP04114 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 RGMA-211ENST00000557420 989 ntTSL 3 BASIC13.87□□□□□ -0.19
APOBP04114 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC13.87□□□□□ -0.19
APOBP04114 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
APOBP04114 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
APOBP04114 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
APOBP04114 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
APOBP04114 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC13.86□□□□□ -0.19
APOBP04114 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC13.86□□□□□ -0.19
APOBP04114 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC13.86□□□□□ -0.19
APOBP04114 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC13.86□□□□□ -0.19
APOBP04114 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
APOBP04114 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
APOBP04114 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms