Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 SERBP1P1-201ENST00000396021 1160 ntBASIC19.63■□□□□ 0.73
UPK3AO75631 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
UPK3AO75631 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.63■□□□□ 0.73
UPK3AO75631 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.63■□□□□ 0.73
UPK3AO75631 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
UPK3AO75631 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
UPK3AO75631 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.62■□□□□ 0.73
UPK3AO75631 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 WWC2-AS2-201ENST00000578387 2183 ntBASIC19.62■□□□□ 0.73
UPK3AO75631 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.62■□□□□ 0.73
UPK3AO75631 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 DUX4L19-201ENST00000557448 1267 ntBASIC19.62■□□□□ 0.73
UPK3AO75631 MIR3181-201ENST00000578512 73 ntBASIC19.62■□□□□ 0.73
UPK3AO75631 AL499627.2-201ENST00000606283 725 ntBASIC19.62■□□□□ 0.73
UPK3AO75631 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
UPK3AO75631 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
UPK3AO75631 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.62■□□□□ 0.73
UPK3AO75631 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
UPK3AO75631 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
UPK3AO75631 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
UPK3AO75631 UNC93B3-201ENST00000308076 687 ntBASIC19.61■□□□□ 0.73
UPK3AO75631 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.61■□□□□ 0.73
UPK3AO75631 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.61■□□□□ 0.73
UPK3AO75631 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.61■□□□□ 0.73
UPK3AO75631 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
UPK3AO75631 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
UPK3AO75631 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
UPK3AO75631 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 AC096631.2-201ENST00000436136 790 ntBASIC19.6■□□□□ 0.73
UPK3AO75631 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.6■□□□□ 0.73
UPK3AO75631 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
UPK3AO75631 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
UPK3AO75631 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.6■□□□□ 0.73
UPK3AO75631 MYB-221ENST00000527615 2381 ntTSL 5 BASIC19.59■□□□□ 0.73
UPK3AO75631 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
UPK3AO75631 AC139530.1-201ENST00000575312 1977 ntBASIC19.59■□□□□ 0.73
UPK3AO75631 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC19.59■□□□□ 0.73
UPK3AO75631 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
UPK3AO75631 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
UPK3AO75631 AC133637.1-201ENST00000624115 1537 ntBASIC19.58■□□□□ 0.73
UPK3AO75631 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.58■□□□□ 0.72
UPK3AO75631 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC19.58■□□□□ 0.72
UPK3AO75631 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.58■□□□□ 0.72
UPK3AO75631 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.58■□□□□ 0.72
UPK3AO75631 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
UPK3AO75631 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
UPK3AO75631 AC004687.1-201ENST00000579003 1625 ntBASIC19.58■□□□□ 0.72
UPK3AO75631 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
UPK3AO75631 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
UPK3AO75631 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.57■□□□□ 0.72
UPK3AO75631 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.57■□□□□ 0.72
UPK3AO75631 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
UPK3AO75631 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.57■□□□□ 0.72
UPK3AO75631 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms