Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
GPC4O75487 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
GPC4O75487 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
GPC4O75487 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
GPC4O75487 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
GPC4O75487 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
GPC4O75487 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
GPC4O75487 AC099791.2-201ENST00000605725 427 ntBASIC21.84■■□□□ 1.09
GPC4O75487 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
GPC4O75487 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
GPC4O75487 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.84■■□□□ 1.09
GPC4O75487 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC21.84■■□□□ 1.09
GPC4O75487 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.84■■□□□ 1.09
GPC4O75487 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
GPC4O75487 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
GPC4O75487 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
GPC4O75487 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
GPC4O75487 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
GPC4O75487 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
GPC4O75487 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.83■■□□□ 1.09
GPC4O75487 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
GPC4O75487 GTSE1-AS1-202ENST00000623117 1518 ntBASIC21.83■■□□□ 1.09
GPC4O75487 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
GPC4O75487 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
GPC4O75487 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.83■■□□□ 1.08
GPC4O75487 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
GPC4O75487 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
GPC4O75487 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
GPC4O75487 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.08
GPC4O75487 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.82■■□□□ 1.08
GPC4O75487 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.82■■□□□ 1.08
GPC4O75487 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.82■■□□□ 1.08
GPC4O75487 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 ECEL1P1-201ENST00000373592 1742 ntBASIC21.82■■□□□ 1.08
GPC4O75487 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
GPC4O75487 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.82■■□□□ 1.08
GPC4O75487 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.82■■□□□ 1.08
GPC4O75487 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
GPC4O75487 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.81■■□□□ 1.08
GPC4O75487 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
GPC4O75487 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 AL136116.3-201ENST00000402907 1138 ntBASIC21.81■■□□□ 1.08
GPC4O75487 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 AC006455.2-201ENST00000429931 906 ntBASIC21.81■■□□□ 1.08
GPC4O75487 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC21.81■■□□□ 1.08
GPC4O75487 AL499627.2-201ENST00000606283 725 ntBASIC21.81■■□□□ 1.08
GPC4O75487 AC009086.3-201ENST00000623486 1008 ntBASIC21.81■■□□□ 1.08
GPC4O75487 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.81■■□□□ 1.08
GPC4O75487 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC21.81■■□□□ 1.08
GPC4O75487 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
GPC4O75487 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
GPC4O75487 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
GPC4O75487 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.81■■□□□ 1.08
GPC4O75487 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
GPC4O75487 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
GPC4O75487 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 AC127496.7-201ENST00000625110 1798 ntBASIC21.8■■□□□ 1.08
GPC4O75487 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.8■■□□□ 1.08
GPC4O75487 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.8■■□□□ 1.08
GPC4O75487 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
GPC4O75487 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
GPC4O75487 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.79■■□□□ 1.08
GPC4O75487 AC092171.4-201ENST00000609130 632 ntBASIC21.79■■□□□ 1.08
GPC4O75487 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.79■■□□□ 1.08
GPC4O75487 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
GPC4O75487 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
GPC4O75487 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
GPC4O75487 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
GPC4O75487 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
GPC4O75487 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.79■■□□□ 1.08
GPC4O75487 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.78■■□□□ 1.08
GPC4O75487 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
GPC4O75487 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
GPC4O75487 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms