Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PTCD1O75127 ABCB10P4-201ENST00000566803 2184 ntBASIC28.37■■■□□ 2.13
PTCD1O75127 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC28.37■■■□□ 2.13
PTCD1O75127 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PTCD1O75127 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC28.37■■■□□ 2.13
PTCD1O75127 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
PTCD1O75127 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC28.37■■■□□ 2.13
PTCD1O75127 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PTCD1O75127 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC28.36■■■□□ 2.13
PTCD1O75127 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PTCD1O75127 AC010141.3-201ENST00000456659 717 ntBASIC28.36■■■□□ 2.13
PTCD1O75127 AC068587.7-201ENST00000641602 218 ntBASIC28.36■■■□□ 2.13
PTCD1O75127 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
PTCD1O75127 AL139125.2-201ENST00000623134 1869 ntBASIC28.36■■■□□ 2.13
PTCD1O75127 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC28.35■■■□□ 2.13
PTCD1O75127 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC28.35■■■□□ 2.13
PTCD1O75127 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PTCD1O75127 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC28.35■■■□□ 2.13
PTCD1O75127 GAS2L1P2-201ENST00000436355 1356 ntBASIC28.35■■■□□ 2.13
PTCD1O75127 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC28.35■■■□□ 2.13
PTCD1O75127 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PTCD1O75127 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC28.34■■■□□ 2.13
PTCD1O75127 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC28.34■■■□□ 2.13
PTCD1O75127 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC28.34■■■□□ 2.13
PTCD1O75127 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC28.34■■■□□ 2.13
PTCD1O75127 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC28.34■■■□□ 2.13
PTCD1O75127 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PTCD1O75127 BID-214ENST00000617586 542 ntTSL 5 BASIC28.34■■■□□ 2.13
PTCD1O75127 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
PTCD1O75127 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
PTCD1O75127 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
PTCD1O75127 AC026185.1-201ENST00000445748 174 ntBASIC28.33■■■□□ 2.13
PTCD1O75127 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC28.33■■■□□ 2.13
PTCD1O75127 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC28.33■■■□□ 2.13
PTCD1O75127 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC28.33■■■□□ 2.13
PTCD1O75127 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC28.33■■■□□ 2.13
PTCD1O75127 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PTCD1O75127 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PTCD1O75127 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PTCD1O75127 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC28.32■■■□□ 2.12
PTCD1O75127 WWOX-218ENST00000627394 894 ntTSL 5 BASIC28.32■■■□□ 2.12
PTCD1O75127 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC28.32■■■□□ 2.12
PTCD1O75127 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
PTCD1O75127 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC28.32■■■□□ 2.12
PTCD1O75127 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC28.31■■■□□ 2.12
PTCD1O75127 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PTCD1O75127 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PTCD1O75127 KRT19P1-201ENST00000405746 1186 ntBASIC28.31■■■□□ 2.12
PTCD1O75127 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.31■■■□□ 2.12
PTCD1O75127 AC087239.1-201ENST00000622671 572 ntBASIC28.31■■■□□ 2.12
PTCD1O75127 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC28.31■■■□□ 2.12
PTCD1O75127 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC28.31■■■□□ 2.12
PTCD1O75127 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC28.31■■■□□ 2.12
PTCD1O75127 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC28.3■■■□□ 2.12
PTCD1O75127 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC28.3■■■□□ 2.12
PTCD1O75127 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PTCD1O75127 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PTCD1O75127 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC28.3■■■□□ 2.12
PTCD1O75127 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.3■■■□□ 2.12
PTCD1O75127 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC28.3■■■□□ 2.12
PTCD1O75127 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC28.3■■■□□ 2.12
PTCD1O75127 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
PTCD1O75127 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC28.29■■■□□ 2.12
PTCD1O75127 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PTCD1O75127 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC28.29■■■□□ 2.12
PTCD1O75127 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC28.29■■■□□ 2.12
PTCD1O75127 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
PTCD1O75127 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC28.29■■■□□ 2.12
PTCD1O75127 CROCCP5-201ENST00000436658 830 ntBASIC28.29■■■□□ 2.12
PTCD1O75127 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.29■■■□□ 2.12
PTCD1O75127 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PTCD1O75127 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PTCD1O75127 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.28■■■□□ 2.12
PTCD1O75127 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC28.28■■■□□ 2.12
PTCD1O75127 TESC-206ENST00000541210 936 ntTSL 3 BASIC28.28■■■□□ 2.12
PTCD1O75127 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
PTCD1O75127 ASL-203ENST00000380839 1765 ntTSL 5 BASIC28.27■■■□□ 2.12
PTCD1O75127 NUDT18-202ENST00000613958 1754 ntTSL 2 BASIC28.27■■■□□ 2.12
PTCD1O75127 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PTCD1O75127 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
PTCD1O75127 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC28.27■■■□□ 2.12
PTCD1O75127 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC28.27■■■□□ 2.12
PTCD1O75127 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC28.27■■■□□ 2.12
PTCD1O75127 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC28.27■■■□□ 2.12
PTCD1O75127 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC28.27■■■□□ 2.12
PTCD1O75127 AC104771.1-201ENST00000603335 964 ntBASIC28.27■■■□□ 2.12
PTCD1O75127 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PTCD1O75127 OXCT2P1-201ENST00000447263 1535 ntBASIC28.27■■■□□ 2.12
PTCD1O75127 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC28.27■■■□□ 2.12
PTCD1O75127 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PTCD1O75127 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PTCD1O75127 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC28.26■■■□□ 2.11
PTCD1O75127 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PTCD1O75127 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.26■■■□□ 2.11
PTCD1O75127 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC28.26■■■□□ 2.11
PTCD1O75127 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC28.26■■■□□ 2.11
PTCD1O75127 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.26■■■□□ 2.11
PTCD1O75127 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC28.26■■■□□ 2.11
PTCD1O75127 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
PTCD1O75127 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC28.25■■■□□ 2.11
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms