Protein–RNA interactions for Protein: O15266

SHOX, Short stature homeobox protein, humanhuman

Predictions only

Length 292 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOXO15266 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SHOXO15266 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHOXO15266 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SHOXO15266 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
SHOXO15266 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SHOXO15266 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 LINC01521-201ENST00000504184 1943 ntBASIC18.57■□□□□ 0.56
SHOXO15266 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 TSPY13P-201ENST00000338964 914 ntBASIC18.57■□□□□ 0.56
SHOXO15266 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.57■□□□□ 0.56
SHOXO15266 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC18.57■□□□□ 0.56
SHOXO15266 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 AC074183.2-201ENST00000623112 922 ntBASIC18.57■□□□□ 0.56
SHOXO15266 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
SHOXO15266 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SHOXO15266 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC18.56■□□□□ 0.56
SHOXO15266 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.56■□□□□ 0.56
SHOXO15266 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC18.56■□□□□ 0.56
SHOXO15266 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.56■□□□□ 0.56
SHOXO15266 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC18.56■□□□□ 0.56
SHOXO15266 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 AL161729.1-201ENST00000604104 1402 ntBASIC18.56■□□□□ 0.56
SHOXO15266 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
SHOXO15266 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SHOXO15266 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOXO15266 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOXO15266 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHOXO15266 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC18.55■□□□□ 0.56
SHOXO15266 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SHOXO15266 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SHOXO15266 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SHOXO15266 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SHOXO15266 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC18.55■□□□□ 0.56
SHOXO15266 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SHOXO15266 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOXO15266 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC18.54■□□□□ 0.56
SHOXO15266 AL022069.1-201ENST00000568025 1636 ntBASIC18.54■□□□□ 0.56
SHOXO15266 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOXO15266 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SHOXO15266 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SHOXO15266 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SHOXO15266 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOXO15266 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
SHOXO15266 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC18.54■□□□□ 0.56
SHOXO15266 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SHOXO15266 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC18.54■□□□□ 0.56
SHOXO15266 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC18.54■□□□□ 0.56
SHOXO15266 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
SHOXO15266 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SHOXO15266 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC18.53■□□□□ 0.56
SHOXO15266 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
SHOXO15266 GAK-223ENST00000628912 497 ntTSL 5 BASIC18.53■□□□□ 0.56
SHOXO15266 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.53■□□□□ 0.56
SHOXO15266 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SHOXO15266 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms