Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CBX4O00257 DENND5A-201ENST00000328194 5031 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.17
CBX4O00257 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC22.38■■□□□ 1.17
CBX4O00257 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC22.38■■□□□ 1.17
CBX4O00257 AC087623.3-201ENST00000607047 1098 ntBASIC22.38■■□□□ 1.17
CBX4O00257 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC22.38■■□□□ 1.17
CBX4O00257 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC22.38■■□□□ 1.17
CBX4O00257 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC22.38■■□□□ 1.17
CBX4O00257 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.17
CBX4O00257 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CBX4O00257 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.37■■□□□ 1.17
CBX4O00257 IRS3P-201ENST00000223076 1006 ntBASIC22.37■■□□□ 1.17
CBX4O00257 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC22.37■■□□□ 1.17
CBX4O00257 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC22.37■■□□□ 1.17
CBX4O00257 AL031602.1-201ENST00000633169 911 ntBASIC22.37■■□□□ 1.17
CBX4O00257 AC068587.7-201ENST00000641602 218 ntBASIC22.37■■□□□ 1.17
CBX4O00257 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CBX4O00257 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CBX4O00257 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC22.37■■□□□ 1.17
CBX4O00257 LINC01960-201ENST00000563759 1884 ntBASIC22.37■■□□□ 1.17
CBX4O00257 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CBX4O00257 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC22.36■■□□□ 1.17
CBX4O00257 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.36■■□□□ 1.17
CBX4O00257 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.36■■□□□ 1.17
CBX4O00257 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.36■■□□□ 1.17
CBX4O00257 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC22.36■■□□□ 1.17
CBX4O00257 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 FAM222B-208ENST00000581381 556 ntTSL 4 BASIC22.36■■□□□ 1.17
CBX4O00257 MIR6821-201ENST00000617625 74 ntBASIC22.36■■□□□ 1.17
CBX4O00257 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 NPAS3-206ENST00000548645 2926 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CBX4O00257 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CBX4O00257 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.35■■□□□ 1.17
CBX4O00257 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.35■■□□□ 1.17
CBX4O00257 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CBX4O00257 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CBX4O00257 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CBX4O00257 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC22.35■■□□□ 1.17
CBX4O00257 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC22.35■■□□□ 1.17
CBX4O00257 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC22.35■■□□□ 1.17
CBX4O00257 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC22.35■■□□□ 1.17
CBX4O00257 AC087239.1-201ENST00000622671 572 ntBASIC22.35■■□□□ 1.17
CBX4O00257 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC22.35■■□□□ 1.17
CBX4O00257 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.35■■□□□ 1.17
CBX4O00257 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.35■■□□□ 1.17
CBX4O00257 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC22.35■■□□□ 1.17
CBX4O00257 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC22.35■■□□□ 1.17
CBX4O00257 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC22.35■■□□□ 1.17
CBX4O00257 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CBX4O00257 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CBX4O00257 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC22.34■■□□□ 1.17
CBX4O00257 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.34■■□□□ 1.17
CBX4O00257 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.34■■□□□ 1.17
CBX4O00257 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CBX4O00257 PARL-206ENST00000435888 1098 ntTSL 5 BASIC22.34■■□□□ 1.17
CBX4O00257 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC22.34■■□□□ 1.17
CBX4O00257 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
CBX4O00257 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC22.34■■□□□ 1.17
CBX4O00257 USP45-205ENST00000472914 1617 ntTSL 5 BASIC22.34■■□□□ 1.17
CBX4O00257 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC22.34■■□□□ 1.17
CBX4O00257 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CBX4O00257 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CBX4O00257 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CBX4O00257 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC22.33■■□□□ 1.17
CBX4O00257 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.17
CBX4O00257 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CBX4O00257 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC22.33■■□□□ 1.17
CBX4O00257 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CBX4O00257 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC22.33■■□□□ 1.17
CBX4O00257 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CBX4O00257 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CBX4O00257 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CBX4O00257 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC22.33■■□□□ 1.16
CBX4O00257 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC22.33■■□□□ 1.16
CBX4O00257 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CBX4O00257 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.33■■□□□ 1.16
CBX4O00257 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
CBX4O00257 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC22.32■■□□□ 1.16
CBX4O00257 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
CBX4O00257 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.32■■□□□ 1.16
CBX4O00257 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CBX4O00257 AC097381.1-201ENST00000429019 1296 ntBASIC22.32■■□□□ 1.16
CBX4O00257 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms