Protein–RNA interactions for Protein: A0A0B4J238

TRAV1-2, T-cell receptor alpha variable 1-2 (Fragment), humanhuman

Predictions only

Length 106 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-2A0A0B4J238 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 AC073130.3-201ENST00000624389 2278 ntBASIC19.07■□□□□ 0.64
TRAV1-2A0A0B4J238 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 THA1P-201ENST00000590384 1145 ntBASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
TRAV1-2A0A0B4J238 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
TRAV1-2A0A0B4J238 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 CA15P2-201ENST00000611168 834 ntBASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
TRAV1-2A0A0B4J238 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 AC009086.3-201ENST00000623486 1008 ntBASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
TRAV1-2A0A0B4J238 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
TRAV1-2A0A0B4J238 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.02■□□□□ 0.63
TRAV1-2A0A0B4J238 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
TRAV1-2A0A0B4J238 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 AC139795.1-202ENST00000500444 432 ntBASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 Z98882.1-201ENST00000622160 2253 ntBASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19■□□□□ 0.63
TRAV1-2A0A0B4J238 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
TRAV1-2A0A0B4J238 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms