Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA1Q9Y5H4 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 TESC-206ENST00000541210 936 ntTSL 3 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 AC011767.1-201ENST00000617410 1153 ntBASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA1Q9Y5H4 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 GPX1P1-201ENST00000388829 606 ntBASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 AC087239.1-201ENST00000622671 572 ntBASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 TMEM191A-211ENST00000637163 1067 ntBASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHGA1Q9Y5H4 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA1Q9Y5H4 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA1Q9Y5H4 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA1Q9Y5H4 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 MIR663A-201ENST00000385250 93 ntBASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 SPI1-203ENST00000533030 661 ntTSL 2 BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 SMUG1P1-201ENST00000590640 811 ntBASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PCDHGA1Q9Y5H4 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 AC010141.3-201ENST00000456659 717 ntBASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 ESRRAP2-201ENST00000418437 1549 ntBASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
PCDHGA1Q9Y5H4 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PCDHGA1Q9Y5H4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
PCDHGA1Q9Y5H4 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 24.4 ms