Protein–RNA interactions for Protein: Q9Y5H2

PCDHGA11, Protocadherin gamma-A11, humanhuman

Predictions only

Length 935 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11Q9Y5H2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 AC127496.7-201ENST00000625110 1798 ntBASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.27■■□□□ 1
PCDHGA11Q9Y5H2 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.27■□□□□ 0.99
PCDHGA11Q9Y5H2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.27■□□□□ 0.99
PCDHGA11Q9Y5H2 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
PCDHGA11Q9Y5H2 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 AL356441.2-201ENST00000443009 864 ntBASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
PCDHGA11Q9Y5H2 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 ECEL1P1-201ENST00000373592 1742 ntBASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
PCDHGA11Q9Y5H2 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 AL499627.2-201ENST00000606283 725 ntBASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.24■□□□□ 0.99
PCDHGA11Q9Y5H2 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
PCDHGA11Q9Y5H2 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 AC004687.1-201ENST00000579003 1625 ntBASIC21.22■□□□□ 0.99
PCDHGA11Q9Y5H2 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
PCDHGA11Q9Y5H2 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
PCDHGA11Q9Y5H2 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms