Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
HIF3AQ9Y2N7 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 KRT16P3-201ENST00000439127 1283 ntBASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 AL117332.1-201ENST00000622628 974 ntBASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
HIF3AQ9Y2N7 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 AC004687.1-201ENST00000579003 1625 ntBASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 AL499627.2-201ENST00000606283 725 ntBASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 AC092053.2-201ENST00000640557 1818 ntBASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
HIF3AQ9Y2N7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 GPX4-213ENST00000622390 1002 ntTSL 5 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
HIF3AQ9Y2N7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
HIF3AQ9Y2N7 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 GUSBP5-201ENST00000418136 578 ntBASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 AC241377.3-202ENST00000626088 1088 ntBASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 AC241585.3-202ENST00000628937 1088 ntBASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 AC245100.8-202ENST00000629247 1058 ntBASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
HIF3AQ9Y2N7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
HIF3AQ9Y2N7 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
HIF3AQ9Y2N7 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
HIF3AQ9Y2N7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
HIF3AQ9Y2N7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms