Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC42.15■■■■■ 4.34
SHROOM4Q9ULL8 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC42.14■■■■■ 4.34
SHROOM4Q9ULL8 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC42.14■■■■■ 4.34
SHROOM4Q9ULL8 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC42.14■■■■■ 4.34
SHROOM4Q9ULL8 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC42.14■■■■■ 4.34
SHROOM4Q9ULL8 AP004607.4-201ENST00000530158 1459 ntBASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 APTR-205ENST00000447009 902 ntTSL 2 BASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC42.13■■■■■ 4.34
SHROOM4Q9ULL8 ABCB10P4-201ENST00000566803 2184 ntBASIC42.12■■■■■ 4.33
SHROOM4Q9ULL8 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC42.12■■■■■ 4.33
SHROOM4Q9ULL8 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC42.12■■■■■ 4.33
SHROOM4Q9ULL8 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC42.12■■■■■ 4.33
SHROOM4Q9ULL8 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC42.12■■■■■ 4.33
SHROOM4Q9ULL8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC42.11■■■■■ 4.33
SHROOM4Q9ULL8 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC42.11■■■■■ 4.33
SHROOM4Q9ULL8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC42.11■■■■■ 4.33
SHROOM4Q9ULL8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 LINC00543-201ENST00000567234 1845 ntBASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 GUSBP6-202ENST00000438529 1198 ntBASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC42.1■■■■■ 4.33
SHROOM4Q9ULL8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC42.09■■■■■ 4.33
SHROOM4Q9ULL8 TSPY20P-201ENST00000450910 630 ntBASIC42.09■■■■■ 4.33
SHROOM4Q9ULL8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC42.09■■■■■ 4.33
SHROOM4Q9ULL8 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC42.09■■■■■ 4.33
SHROOM4Q9ULL8 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC42.09■■■■■ 4.33
SHROOM4Q9ULL8 AC144652.1-201ENST00000609974 1624 ntBASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 AC004854.2-201ENST00000608450 1441 ntBASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 GPX1P1-201ENST00000388829 606 ntBASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 KRT18P6-201ENST00000555540 1265 ntBASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 AC105233.4-201ENST00000642045 216 ntBASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC42.08■■■■■ 4.33
SHROOM4Q9ULL8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC42.07■■■■■ 4.33
SHROOM4Q9ULL8 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC42.07■■■■■ 4.33
SHROOM4Q9ULL8 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC42.07■■■■■ 4.33
SHROOM4Q9ULL8 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC42.07■■■■■ 4.33
SHROOM4Q9ULL8 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC42.07■■■■■ 4.32
SHROOM4Q9ULL8 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC42.06■■■■■ 4.32
SHROOM4Q9ULL8 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 DUX4L4-201ENST00000566884 1269 ntBASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC42.05■■■■■ 4.32
SHROOM4Q9ULL8 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 KRT18P11-201ENST00000435214 1283 ntBASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC42.04■■■■■ 4.32
SHROOM4Q9ULL8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC42.03■■■■■ 4.32
SHROOM4Q9ULL8 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC42.02■■■■■ 4.32
SHROOM4Q9ULL8 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC42.02■■■■■ 4.32
SHROOM4Q9ULL8 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC42.02■■■■■ 4.32
SHROOM4Q9ULL8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC42.02■■■■■ 4.32
SHROOM4Q9ULL8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC42.02■■■■■ 4.32
SHROOM4Q9ULL8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 AC079630.1-202ENST00000618127 1840 ntBASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC42.01■■■■■ 4.32
SHROOM4Q9ULL8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC42.01■■■■■ 4.31
SHROOM4Q9ULL8 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC42■■■■■ 4.31
SHROOM4Q9ULL8 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC42■■■■■ 4.31
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms