Protein–RNA interactions for Protein: Q9BT23

LIMD2, LIM domain-containing protein 2, humanhuman

Predictions only

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD2Q9BT23 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 LINC00565-201ENST00000562710 2331 ntBASIC12.99□□□□□ -0.33
LIMD2Q9BT23 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.33
LIMD2Q9BT23 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC12.98□□□□□ -0.33
LIMD2Q9BT23 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC12.97□□□□□ -0.33
LIMD2Q9BT23 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 CLTA-210ENST00000540080 989 ntTSL 2 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC12.96□□□□□ -0.33
LIMD2Q9BT23 NFE2L3P1-201ENST00000588207 1959 ntBASIC12.96□□□□□ -0.34
LIMD2Q9BT23 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC12.96□□□□□ -0.34
LIMD2Q9BT23 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 MIR4787-201ENST00000607364 84 ntBASIC12.95□□□□□ -0.34
LIMD2Q9BT23 AC092028.1-203ENST00000608262 953 ntBASIC12.95□□□□□ -0.34
LIMD2Q9BT23 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 HCG11-201ENST00000411553 5696 ntBASIC12.95□□□□□ -0.34
LIMD2Q9BT23 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC12.95□□□□□ -0.34
LIMD2Q9BT23 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
LIMD2Q9BT23 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC12.94□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms