Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX3Q99909 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC18.3■□□□□ 0.52
SSX3Q99909 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
SSX3Q99909 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SSX3Q99909 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 ALDH1A3-203ENST00000557963 1670 ntBASIC18.29■□□□□ 0.52
SSX3Q99909 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SSX3Q99909 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 AC110285.6-201ENST00000617652 491 ntBASIC18.29■□□□□ 0.52
SSX3Q99909 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SSX3Q99909 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC18.29■□□□□ 0.52
SSX3Q99909 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
SSX3Q99909 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC18.29■□□□□ 0.52
SSX3Q99909 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
SSX3Q99909 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.29■□□□□ 0.52
SSX3Q99909 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 ABCB10P4-201ENST00000566803 2184 ntBASIC18.28■□□□□ 0.52
SSX3Q99909 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
SSX3Q99909 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SSX3Q99909 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 GALC-202ENST00000393568 2054 ntTSL 2 BASIC18.28■□□□□ 0.52
SSX3Q99909 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC18.28■□□□□ 0.52
SSX3Q99909 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
SSX3Q99909 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
SSX3Q99909 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
SSX3Q99909 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
SSX3Q99909 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC18.27■□□□□ 0.52
SSX3Q99909 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC18.27■□□□□ 0.52
SSX3Q99909 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.27■□□□□ 0.52
SSX3Q99909 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC18.27■□□□□ 0.52
SSX3Q99909 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
SSX3Q99909 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSX3Q99909 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSX3Q99909 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
SSX3Q99909 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.26■□□□□ 0.51
SSX3Q99909 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
SSX3Q99909 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX3Q99909 MIR638-201ENST00000385237 100 ntBASIC18.26■□□□□ 0.51
SSX3Q99909 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX3Q99909 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX3Q99909 AC009102.2-201ENST00000606772 1639 ntBASIC18.26■□□□□ 0.51
SSX3Q99909 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX3Q99909 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
SSX3Q99909 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
SSX3Q99909 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
SSX3Q99909 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.25■□□□□ 0.51
SSX3Q99909 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC18.25■□□□□ 0.51
SSX3Q99909 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX3Q99909 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC18.25■□□□□ 0.51
SSX3Q99909 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
SSX3Q99909 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
SSX3Q99909 NFE2L3P1-201ENST00000588207 1959 ntBASIC18.24■□□□□ 0.51
SSX3Q99909 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
SSX3Q99909 CBWD3-213ENST00000618217 1611 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SSX3Q99909 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 UNC93B3-201ENST00000308076 687 ntBASIC18.24■□□□□ 0.51
SSX3Q99909 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX3Q99909 PBX2P1-201ENST00000493219 1291 ntBASIC18.24■□□□□ 0.51
SSX3Q99909 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 AC092171.4-201ENST00000609130 632 ntBASIC18.24■□□□□ 0.51
SSX3Q99909 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.24■□□□□ 0.51
SSX3Q99909 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.24■□□□□ 0.51
SSX3Q99909 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
SSX3Q99909 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
SSX3Q99909 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.23■□□□□ 0.51
SSX3Q99909 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.23■□□□□ 0.51
SSX3Q99909 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
SSX3Q99909 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
SSX3Q99909 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 49.3 ms