Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC19.49■□□□□ 0.71
COL12A1Q99715 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
COL12A1Q99715 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.49■□□□□ 0.71
COL12A1Q99715 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.49■□□□□ 0.71
COL12A1Q99715 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COL12A1Q99715 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COL12A1Q99715 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COL12A1Q99715 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.48■□□□□ 0.71
COL12A1Q99715 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL12A1Q99715 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
COL12A1Q99715 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.48■□□□□ 0.71
COL12A1Q99715 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.48■□□□□ 0.71
COL12A1Q99715 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
COL12A1Q99715 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
COL12A1Q99715 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL12A1Q99715 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COL12A1Q99715 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC19.48■□□□□ 0.71
COL12A1Q99715 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL12A1Q99715 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
COL12A1Q99715 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.47■□□□□ 0.71
COL12A1Q99715 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.47■□□□□ 0.71
COL12A1Q99715 BAALC-201ENST00000297574 801 ntTSL 3 BASIC19.47■□□□□ 0.71
COL12A1Q99715 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.47■□□□□ 0.71
COL12A1Q99715 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.47■□□□□ 0.71
COL12A1Q99715 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COL12A1Q99715 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.47■□□□□ 0.71
COL12A1Q99715 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COL12A1Q99715 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COL12A1Q99715 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
COL12A1Q99715 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
COL12A1Q99715 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL12A1Q99715 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC19.46■□□□□ 0.71
COL12A1Q99715 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
COL12A1Q99715 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COL12A1Q99715 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC19.46■□□□□ 0.71
COL12A1Q99715 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC19.46■□□□□ 0.71
COL12A1Q99715 AC073912.3-201ENST00000624414 853 ntBASIC19.46■□□□□ 0.71
COL12A1Q99715 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COL12A1Q99715 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.46■□□□□ 0.71
COL12A1Q99715 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.45■□□□□ 0.7
COL12A1Q99715 AC133552.2-202ENST00000575694 574 ntBASIC19.45■□□□□ 0.7
COL12A1Q99715 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL12A1Q99715 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.45■□□□□ 0.7
COL12A1Q99715 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COL12A1Q99715 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC19.45■□□□□ 0.7
COL12A1Q99715 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COL12A1Q99715 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC19.45■□□□□ 0.7
COL12A1Q99715 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COL12A1Q99715 MME-217ENST00000616757 1315 ntTSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.45■□□□□ 0.7
COL12A1Q99715 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC19.45■□□□□ 0.7
COL12A1Q99715 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
COL12A1Q99715 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL12A1Q99715 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC19.44■□□□□ 0.7
COL12A1Q99715 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL12A1Q99715 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.44■□□□□ 0.7
COL12A1Q99715 AC007322.1-201ENST00000426983 750 ntBASIC19.44■□□□□ 0.7
COL12A1Q99715 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC19.44■□□□□ 0.7
COL12A1Q99715 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.44■□□□□ 0.7
COL12A1Q99715 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
COL12A1Q99715 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.44■□□□□ 0.7
COL12A1Q99715 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.44■□□□□ 0.7
COL12A1Q99715 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.44■□□□□ 0.7
COL12A1Q99715 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.44■□□□□ 0.7
COL12A1Q99715 RHOD-202ENST00000532559 538 ntTSL 3 BASIC19.44■□□□□ 0.7
COL12A1Q99715 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
COL12A1Q99715 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.43■□□□□ 0.7
COL12A1Q99715 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.43■□□□□ 0.7
COL12A1Q99715 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL12A1Q99715 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
COL12A1Q99715 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL12A1Q99715 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.43■□□□□ 0.7
COL12A1Q99715 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL12A1Q99715 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.43■□□□□ 0.7
COL12A1Q99715 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
COL12A1Q99715 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.43■□□□□ 0.7
COL12A1Q99715 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.43■□□□□ 0.7
COL12A1Q99715 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL12A1Q99715 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
COL12A1Q99715 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL12A1Q99715 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.42■□□□□ 0.7
COL12A1Q99715 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
COL12A1Q99715 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms