Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 EI24-211ENST00000534546 1544 ntTSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
LYSMD1Q96S90 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
LYSMD1Q96S90 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 AC126544.1-201ENST00000580842 1059 ntBASIC21.94■■□□□ 1.1
LYSMD1Q96S90 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 C9orf163-202ENST00000624034 2573 ntBASIC21.94■■□□□ 1.1
LYSMD1Q96S90 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
LYSMD1Q96S90 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
LYSMD1Q96S90 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.93■■□□□ 1.1
LYSMD1Q96S90 IGHV3-19-201ENST00000521488 291 ntBASIC21.93■■□□□ 1.1
LYSMD1Q96S90 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.93■■□□□ 1.1
LYSMD1Q96S90 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 AC087742.1-201ENST00000575880 1738 ntBASIC21.92■■□□□ 1.1
LYSMD1Q96S90 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.92■■□□□ 1.1
LYSMD1Q96S90 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
LYSMD1Q96S90 ESRRAP2-201ENST00000418437 1549 ntBASIC21.9■■□□□ 1.1
LYSMD1Q96S90 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 GRAMD4P2-201ENST00000423297 1097 ntBASIC21.9■■□□□ 1.1
LYSMD1Q96S90 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 AC087239.1-201ENST00000622671 572 ntBASIC21.9■■□□□ 1.1
LYSMD1Q96S90 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
LYSMD1Q96S90 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
LYSMD1Q96S90 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
LYSMD1Q96S90 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.89■■□□□ 1.09
LYSMD1Q96S90 AC010141.3-201ENST00000456659 717 ntBASIC21.89■■□□□ 1.09
LYSMD1Q96S90 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LYSMD1Q96S90 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
LYSMD1Q96S90 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
LYSMD1Q96S90 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
LYSMD1Q96S90 C1orf229-201ENST00000623686 2258 ntBASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms