Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.54■■□□□ 1.04
LMX1AQ8TE12 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 AC090192.1-201ENST00000517740 490 ntBASIC21.53■■□□□ 1.04
LMX1AQ8TE12 AC092437.1-201ENST00000624794 1048 ntBASIC21.53■■□□□ 1.04
LMX1AQ8TE12 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.53■■□□□ 1.04
LMX1AQ8TE12 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 AC004911.1-201ENST00000416316 871 ntBASIC21.52■■□□□ 1.04
LMX1AQ8TE12 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 AC087239.1-201ENST00000622671 572 ntBASIC21.52■■□□□ 1.04
LMX1AQ8TE12 AC068587.7-201ENST00000641602 218 ntBASIC21.52■■□□□ 1.04
LMX1AQ8TE12 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LMX1AQ8TE12 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LMX1AQ8TE12 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
LMX1AQ8TE12 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LMX1AQ8TE12 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.5■■□□□ 1.03
LMX1AQ8TE12 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
LMX1AQ8TE12 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.5■■□□□ 1.03
LMX1AQ8TE12 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
LMX1AQ8TE12 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 AC010141.3-201ENST00000456659 717 ntBASIC21.48■■□□□ 1.03
LMX1AQ8TE12 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
LMX1AQ8TE12 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
LMX1AQ8TE12 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
LMX1AQ8TE12 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
LMX1AQ8TE12 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LMX1AQ8TE12 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms