Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 KRT18P5-201ENST00000436075 1291 ntBASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
NKX2-3Q8TAU0 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC26.16■■□□□ 1.78
NKX2-3Q8TAU0 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 COMT-203ENST00000403184 2217 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC26.15■■□□□ 1.78
NKX2-3Q8TAU0 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 AC092437.1-201ENST00000624794 1048 ntBASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
NKX2-3Q8TAU0 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
NKX2-3Q8TAU0 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 MPST-208ENST00000628507 698 ntTSL 5 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC26.13■■□□□ 1.77
NKX2-3Q8TAU0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
NKX2-3Q8TAU0 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 DENND3-207ENST00000518347 850 ntTSL 2 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC26.11■■□□□ 1.77
NKX2-3Q8TAU0 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 YBX1P1-201ENST00000445822 960 ntBASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.1■■□□□ 1.77
NKX2-3Q8TAU0 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC26.09■■□□□ 1.77
NKX2-3Q8TAU0 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 HACD1-201ENST00000326961 773 ntTSL 2 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC26.08■■□□□ 1.77
NKX2-3Q8TAU0 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 C1orf229-201ENST00000623686 2258 ntBASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC26.07■■□□□ 1.76
NKX2-3Q8TAU0 AC004911.1-201ENST00000416316 871 ntBASIC26.07■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms