Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC6.72□□□□□ -1.33
SYNE1Q8NF91 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 ALDH1A3-203ENST00000557963 1670 ntBASIC6.71□□□□□ -1.33
SYNE1Q8NF91 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 AC004911.1-201ENST00000416316 871 ntBASIC6.71□□□□□ -1.33
SYNE1Q8NF91 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 OR2I1P-207ENST00000453522 948 ntBASIC6.71□□□□□ -1.33
SYNE1Q8NF91 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.33
SYNE1Q8NF91 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 KRT18P14-201ENST00000534205 1250 ntBASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AC009086.3-201ENST00000623486 1008 ntBASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AC004812.2-201ENST00000611079 2094 ntBASIC6.71□□□□□ -1.34
SYNE1Q8NF91 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 MED17-227ENST00000640521 2047 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 CASK-201ENST00000378154 2494 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 AC133637.1-201ENST00000624115 1537 ntBASIC6.71□□□□□ -1.34
SYNE1Q8NF91 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 STX7-201ENST00000367937 1090 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC6.71□□□□□ -1.34
SYNE1Q8NF91 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC6.7□□□□□ -1.34
SYNE1Q8NF91 AL161729.1-201ENST00000604104 1402 ntBASIC6.7□□□□□ -1.34
SYNE1Q8NF91 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 H19-210ENST00000439725 1929 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 CROCCP5-201ENST00000436658 830 ntBASIC6.7□□□□□ -1.34
SYNE1Q8NF91 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 PCMT1-202ENST00000367380 1628 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 PCMT1-211ENST00000544496 1628 ntTSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC6.7□□□□□ -1.34
SYNE1Q8NF91 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms