Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 FAM210CP-201ENST00000445714 574 ntBASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC26.4■■□□□ 1.82
SMC1BQ8NDV3 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC1BQ8NDV3 ALDH1A3-203ENST00000557963 1670 ntBASIC26.39■■□□□ 1.82
SMC1BQ8NDV3 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC1BQ8NDV3 MIR6089-201ENST00000616698 64 ntBASIC26.39■■□□□ 1.82
SMC1BQ8NDV3 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SMC1BQ8NDV3 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.39■■□□□ 1.81
SMC1BQ8NDV3 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 FP325331.1-202ENST00000623531 1380 ntBASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 ESRRAP1-201ENST00000400596 1257 ntBASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 AC104187.1-201ENST00000607510 612 ntBASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 AC010331.1-201ENST00000611423 582 ntBASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC1BQ8NDV3 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 BRI3-207ENST00000539286 699 ntTSL 2 BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 AC092118.2-201ENST00000613495 667 ntBASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC1BQ8NDV3 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
SMC1BQ8NDV3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SMC1BQ8NDV3 PPP1R14BP2-201ENST00000426284 444 ntBASIC26.36■■□□□ 1.81
SMC1BQ8NDV3 MYCNOS-205ENST00000641950 531 ntBASIC26.36■■□□□ 1.81
SMC1BQ8NDV3 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 CNN2P6-201ENST00000439038 900 ntBASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC26.35■■□□□ 1.81
SMC1BQ8NDV3 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 ECEL1P3-201ENST00000427961 737 ntBASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 UNC93B4-201ENST00000505679 747 ntBASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC26.34■■□□□ 1.81
SMC1BQ8NDV3 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 MIPEPP3-201ENST00000412105 444 ntBASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 APTR-203ENST00000430801 583 ntTSL 5 BASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC26.33■■□□□ 1.81
SMC1BQ8NDV3 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC26.32■■□□□ 1.8
SMC1BQ8NDV3 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
SMC1BQ8NDV3 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 AC010501.1-201ENST00000606270 1962 ntBASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 MAX-217ENST00000557277 728 ntTSL 3 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
SMC1BQ8NDV3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC26.3■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms