Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.29■■□□□ 1.64
SH3RF1Q7Z6J0 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 RAB43-208ENST00000615093 783 ntTSL 5 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AC241377.3-202ENST00000626088 1088 ntBASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AC241585.3-202ENST00000628937 1088 ntBASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AC245100.8-202ENST00000629247 1058 ntBASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 AC079630.1-202ENST00000618127 1840 ntBASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC25.28■■□□□ 1.64
SH3RF1Q7Z6J0 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SH3RF1Q7Z6J0 USF2-207ENST00000595068 1612 ntTSL 5 BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC25.26■■□□□ 1.63
SH3RF1Q7Z6J0 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 SNX3-202ENST00000349379 890 ntTSL 2 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.25■■□□□ 1.63
SH3RF1Q7Z6J0 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC25.24■■□□□ 1.63
SH3RF1Q7Z6J0 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 AC126544.1-201ENST00000580842 1059 ntBASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 C1orf229-201ENST00000623686 2258 ntBASIC25.23■■□□□ 1.63
SH3RF1Q7Z6J0 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 NME4-202ENST00000382940 766 ntTSL 3 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 NME4-211ENST00000620944 1193 ntTSL 2 BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 AC009086.3-201ENST00000623486 1008 ntBASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SH3RF1Q7Z6J0 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 TSPY26P-201ENST00000476365 1326 ntBASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC25.21■■□□□ 1.63
SH3RF1Q7Z6J0 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms