Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 MIR4651-201ENST00000582622 73 ntBASIC30.29■■■□□ 2.44
NPHP3Q7Z494 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 AC231657.2-201ENST00000624556 255 ntBASIC30.29■■■□□ 2.44
NPHP3Q7Z494 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC30.29■■■□□ 2.44
NPHP3Q7Z494 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
NPHP3Q7Z494 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 METTL15-202ENST00000403099 795 ntTSL 5 BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
NPHP3Q7Z494 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.44
NPHP3Q7Z494 OAS3-207ENST00000551007 998 ntTSL 2 BASIC30.26■■■□□ 2.44
NPHP3Q7Z494 AL138781.1-201ENST00000566567 1274 ntBASIC30.26■■■□□ 2.44
NPHP3Q7Z494 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC30.26■■■□□ 2.44
NPHP3Q7Z494 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC30.26■■■□□ 2.44
NPHP3Q7Z494 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP3Q7Z494 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP3Q7Z494 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC30.26■■■□□ 2.43
NPHP3Q7Z494 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 EI24-213ENST00000618552 1747 ntTSL 5 BASIC30.25■■■□□ 2.43
NPHP3Q7Z494 AC145676.1-201ENST00000514988 2004 ntBASIC30.25■■■□□ 2.43
NPHP3Q7Z494 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 EI24-211ENST00000534546 1544 ntTSL 2 BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP3Q7Z494 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 DUX4L16-201ENST00000555130 1264 ntBASIC30.23■■■□□ 2.43
NPHP3Q7Z494 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 AC005181.1-201ENST00000604782 1256 ntBASIC30.23■■■□□ 2.43
NPHP3Q7Z494 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP3Q7Z494 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 AC069152.1-201ENST00000438030 544 ntBASIC30.22■■■□□ 2.43
NPHP3Q7Z494 AC010141.3-201ENST00000456659 717 ntBASIC30.22■■■□□ 2.43
NPHP3Q7Z494 RGMA-211ENST00000557420 989 ntTSL 3 BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP3Q7Z494 AC087239.1-201ENST00000622671 572 ntBASIC30.22■■■□□ 2.43
NPHP3Q7Z494 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC30.21■■■□□ 2.43
NPHP3Q7Z494 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NPHP3Q7Z494 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
NPHP3Q7Z494 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.43
NPHP3Q7Z494 SLC29A4P1-201ENST00000398760 971 ntBASIC30.2■■■□□ 2.42
NPHP3Q7Z494 AC007322.1-201ENST00000426983 750 ntBASIC30.2■■■□□ 2.42
NPHP3Q7Z494 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC30.2■■■□□ 2.42
NPHP3Q7Z494 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 FAM201B-201ENST00000458407 597 ntBASIC30.19■■■□□ 2.42
NPHP3Q7Z494 AC093827.2-201ENST00000512654 315 ntBASIC30.19■■■□□ 2.42
NPHP3Q7Z494 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 PFKL-212ENST00000628044 129 ntTSL 3 BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP3Q7Z494 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms