Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC18.56■□□□□ 0.56
VPS13CQ709C8 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VPS13CQ709C8 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.55■□□□□ 0.56
VPS13CQ709C8 LINC02228-203ENST00000641970 1355 ntBASIC18.55■□□□□ 0.56
VPS13CQ709C8 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 AC105233.4-201ENST00000642045 216 ntBASIC18.55■□□□□ 0.56
VPS13CQ709C8 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
VPS13CQ709C8 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13CQ709C8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VPS13CQ709C8 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 RARA-203ENST00000394086 2008 ntTSL 2 BASIC18.55■□□□□ 0.56
VPS13CQ709C8 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VPS13CQ709C8 AC141586.4-201ENST00000624558 1573 ntBASIC18.55■□□□□ 0.56
VPS13CQ709C8 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VPS13CQ709C8 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.54■□□□□ 0.56
VPS13CQ709C8 KRT19P1-201ENST00000405746 1186 ntBASIC18.54■□□□□ 0.56
VPS13CQ709C8 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VPS13CQ709C8 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS13CQ709C8 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.54■□□□□ 0.56
VPS13CQ709C8 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VPS13CQ709C8 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13CQ709C8 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13CQ709C8 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13CQ709C8 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13CQ709C8 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS13CQ709C8 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC18.53■□□□□ 0.56
VPS13CQ709C8 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
VPS13CQ709C8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.53■□□□□ 0.56
VPS13CQ709C8 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS13CQ709C8 MFSD11-216ENST00000590393 1141 ntBASIC18.52■□□□□ 0.56
VPS13CQ709C8 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS13CQ709C8 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
VPS13CQ709C8 KRT18P11-201ENST00000435214 1283 ntBASIC18.52■□□□□ 0.56
VPS13CQ709C8 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 APTR-205ENST00000447009 902 ntTSL 2 BASIC18.52■□□□□ 0.56
VPS13CQ709C8 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
VPS13CQ709C8 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.52■□□□□ 0.56
VPS13CQ709C8 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13CQ709C8 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13CQ709C8 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13CQ709C8 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.52■□□□□ 0.55
VPS13CQ709C8 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.52■□□□□ 0.55
VPS13CQ709C8 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13CQ709C8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC18.51■□□□□ 0.55
VPS13CQ709C8 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 AC004812.2-201ENST00000611079 2094 ntBASIC18.51■□□□□ 0.55
VPS13CQ709C8 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.51■□□□□ 0.55
VPS13CQ709C8 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13CQ709C8 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 METTL26-203ENST00000397664 604 ntTSL 2 BASIC18.51■□□□□ 0.55
VPS13CQ709C8 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
VPS13CQ709C8 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 PRORSD1P-201ENST00000295112 541 ntBASIC18.5■□□□□ 0.55
VPS13CQ709C8 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 UBE2DNL-204ENST00000602536 740 ntBASIC18.5■□□□□ 0.55
VPS13CQ709C8 MDK-213ENST00000617138 635 ntTSL 2 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
VPS13CQ709C8 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.5■□□□□ 0.55
VPS13CQ709C8 AC073210.2-201ENST00000430369 194 ntBASIC18.5■□□□□ 0.55
VPS13CQ709C8 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.49■□□□□ 0.55
VPS13CQ709C8 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
VPS13CQ709C8 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 13.7 ms