Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 FP325331.1-202ENST00000623531 1380 ntBASIC18.89■□□□□ 0.61
USF3Q68DE3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC18.89■□□□□ 0.61
USF3Q68DE3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC18.89■□□□□ 0.61
USF3Q68DE3 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 AC004911.1-201ENST00000416316 871 ntBASIC18.89■□□□□ 0.61
USF3Q68DE3 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 AL354811.1-201ENST00000610286 706 ntBASIC18.89■□□□□ 0.61
USF3Q68DE3 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
USF3Q68DE3 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC18.88■□□□□ 0.61
USF3Q68DE3 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
USF3Q68DE3 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
USF3Q68DE3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USF3Q68DE3 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.88■□□□□ 0.61
USF3Q68DE3 AP005435.1-201ENST00000529293 1178 ntBASIC18.88■□□□□ 0.61
USF3Q68DE3 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC18.88■□□□□ 0.61
USF3Q68DE3 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
USF3Q68DE3 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC18.88■□□□□ 0.61
USF3Q68DE3 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
USF3Q68DE3 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
USF3Q68DE3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.87■□□□□ 0.61
USF3Q68DE3 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
USF3Q68DE3 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.87■□□□□ 0.61
USF3Q68DE3 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.86■□□□□ 0.61
USF3Q68DE3 NTF6G-201ENST00000591094 616 ntBASIC18.86■□□□□ 0.61
USF3Q68DE3 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
USF3Q68DE3 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.86■□□□□ 0.61
USF3Q68DE3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.86■□□□□ 0.61
USF3Q68DE3 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.86■□□□□ 0.61
USF3Q68DE3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC18.86■□□□□ 0.61
USF3Q68DE3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC18.86■□□□□ 0.61
USF3Q68DE3 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
USF3Q68DE3 AL499627.2-201ENST00000606283 725 ntBASIC18.85■□□□□ 0.61
USF3Q68DE3 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF3Q68DE3 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF3Q68DE3 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
USF3Q68DE3 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF3Q68DE3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.85■□□□□ 0.61
USF3Q68DE3 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.85■□□□□ 0.61
USF3Q68DE3 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
USF3Q68DE3 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
USF3Q68DE3 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USF3Q68DE3 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF3Q68DE3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
USF3Q68DE3 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.84■□□□□ 0.61
USF3Q68DE3 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF3Q68DE3 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF3Q68DE3 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC18.84■□□□□ 0.61
USF3Q68DE3 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF3Q68DE3 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
USF3Q68DE3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
USF3Q68DE3 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 AC144652.1-201ENST00000609974 1624 ntBASIC18.83■□□□□ 0.61
USF3Q68DE3 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC18.83■□□□□ 0.61
USF3Q68DE3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
USF3Q68DE3 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.83■□□□□ 0.6
USF3Q68DE3 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
USF3Q68DE3 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC18.83■□□□□ 0.6
USF3Q68DE3 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
USF3Q68DE3 ME2-208ENST00000638937 2471 ntTSL 5 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 16 ms