Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
H3F3AP84243 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
H3F3AP84243 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.69■□□□□ 0.74
H3F3AP84243 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.68■□□□□ 0.74
H3F3AP84243 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
H3F3AP84243 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
H3F3AP84243 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC19.68■□□□□ 0.74
H3F3AP84243 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.68■□□□□ 0.74
H3F3AP84243 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
H3F3AP84243 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 C1orf229-201ENST00000623686 2258 ntBASIC19.68■□□□□ 0.74
H3F3AP84243 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
H3F3AP84243 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
H3F3AP84243 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.67■□□□□ 0.74
H3F3AP84243 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC19.67■□□□□ 0.74
H3F3AP84243 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.67■□□□□ 0.74
H3F3AP84243 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
H3F3AP84243 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
H3F3AP84243 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.67■□□□□ 0.74
H3F3AP84243 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
H3F3AP84243 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
H3F3AP84243 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
H3F3AP84243 EDA-201ENST00000338901 1233 ntBASIC19.66■□□□□ 0.74
H3F3AP84243 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.66■□□□□ 0.74
H3F3AP84243 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.66■□□□□ 0.74
H3F3AP84243 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
H3F3AP84243 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
H3F3AP84243 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
H3F3AP84243 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
H3F3AP84243 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
H3F3AP84243 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
H3F3AP84243 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.65■□□□□ 0.74
H3F3AP84243 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
H3F3AP84243 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC19.65■□□□□ 0.74
H3F3AP84243 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
H3F3AP84243 AL031602.1-201ENST00000633169 911 ntBASIC19.65■□□□□ 0.74
H3F3AP84243 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
H3F3AP84243 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
H3F3AP84243 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.65■□□□□ 0.74
H3F3AP84243 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
H3F3AP84243 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
H3F3AP84243 BX842568.3-201ENST00000418104 571 ntBASIC19.64■□□□□ 0.73
H3F3AP84243 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.64■□□□□ 0.73
H3F3AP84243 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.64■□□□□ 0.73
H3F3AP84243 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
H3F3AP84243 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
H3F3AP84243 AC087742.1-201ENST00000575880 1738 ntBASIC19.64■□□□□ 0.73
H3F3AP84243 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
H3F3AP84243 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
H3F3AP84243 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
H3F3AP84243 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
H3F3AP84243 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
H3F3AP84243 AC012676.1-201ENST00000574705 1949 ntBASIC19.63■□□□□ 0.73
H3F3AP84243 LINC01960-201ENST00000563759 1884 ntBASIC19.63■□□□□ 0.73
H3F3AP84243 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
H3F3AP84243 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
H3F3AP84243 SLC47A1P1-202ENST00000449666 945 ntBASIC19.63■□□□□ 0.73
H3F3AP84243 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
H3F3AP84243 AC010525.1-201ENST00000585559 441 ntBASIC19.63■□□□□ 0.73
H3F3AP84243 AL031432.3-201ENST00000607698 485 ntBASIC19.63■□□□□ 0.73
H3F3AP84243 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
H3F3AP84243 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
H3F3AP84243 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 ESRRAP2-201ENST00000418437 1549 ntBASIC19.62■□□□□ 0.73
H3F3AP84243 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.62■□□□□ 0.73
H3F3AP84243 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC19.62■□□□□ 0.73
H3F3AP84243 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.62■□□□□ 0.73
H3F3AP84243 AL355001.2-201ENST00000620617 1191 ntBASIC19.62■□□□□ 0.73
H3F3AP84243 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.62■□□□□ 0.73
H3F3AP84243 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC19.62■□□□□ 0.73
H3F3AP84243 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
H3F3AP84243 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.62■□□□□ 0.73
H3F3AP84243 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
H3F3AP84243 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.61■□□□□ 0.73
H3F3AP84243 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC19.61■□□□□ 0.73
H3F3AP84243 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
H3F3AP84243 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms