Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.82■■□□□ 1.08
LIMK1P53667 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 AC011767.1-201ENST00000617410 1153 ntBASIC21.82■■□□□ 1.08
LIMK1P53667 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.82■■□□□ 1.08
LIMK1P53667 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LIMK1P53667 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC21.82■■□□□ 1.08
LIMK1P53667 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
LIMK1P53667 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LIMK1P53667 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LIMK1P53667 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
LIMK1P53667 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LIMK1P53667 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LIMK1P53667 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC21.81■■□□□ 1.08
LIMK1P53667 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.81■■□□□ 1.08
LIMK1P53667 AC010501.1-201ENST00000606270 1962 ntBASIC21.81■■□□□ 1.08
LIMK1P53667 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
LIMK1P53667 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
LIMK1P53667 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LIMK1P53667 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMK1P53667 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMK1P53667 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.8■■□□□ 1.08
LIMK1P53667 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.8■■□□□ 1.08
LIMK1P53667 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LIMK1P53667 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
LIMK1P53667 CD37-213ENST00000598095 1598 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMK1P53667 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMK1P53667 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMK1P53667 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LIMK1P53667 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.79■■□□□ 1.08
LIMK1P53667 AL121832.2-201ENST00000610979 668 ntBASIC21.79■■□□□ 1.08
LIMK1P53667 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.79■■□□□ 1.08
LIMK1P53667 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMK1P53667 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LIMK1P53667 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMK1P53667 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMK1P53667 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LIMK1P53667 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
LIMK1P53667 AC093827.2-201ENST00000512654 315 ntBASIC21.78■■□□□ 1.08
LIMK1P53667 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMK1P53667 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMK1P53667 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMK1P53667 AC022211.4-201ENST00000625094 2161 ntBASIC21.78■■□□□ 1.08
LIMK1P53667 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
LIMK1P53667 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.78■■□□□ 1.08
LIMK1P53667 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC21.77■■□□□ 1.08
LIMK1P53667 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
LIMK1P53667 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.77■■□□□ 1.08
LIMK1P53667 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.77■■□□□ 1.08
LIMK1P53667 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
LIMK1P53667 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.77■■□□□ 1.08
LIMK1P53667 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.77■■□□□ 1.08
LIMK1P53667 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC21.77■■□□□ 1.08
LIMK1P53667 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
LIMK1P53667 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
LIMK1P53667 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.77■■□□□ 1.07
LIMK1P53667 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
LIMK1P53667 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LIMK1P53667 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC21.76■■□□□ 1.07
LIMK1P53667 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
LIMK1P53667 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.76■■□□□ 1.07
LIMK1P53667 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LIMK1P53667 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
LIMK1P53667 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.75■■□□□ 1.07
LIMK1P53667 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms