Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
BRCA1P38398 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.31■■□□□ 1.96
BRCA1P38398 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC27.31■■□□□ 1.96
BRCA1P38398 AC079140.4-201ENST00000507448 529 ntBASIC27.31■■□□□ 1.96
BRCA1P38398 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC27.31■■□□□ 1.96
BRCA1P38398 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.31■■□□□ 1.96
BRCA1P38398 MYCNOS-205ENST00000641950 531 ntBASIC27.31■■□□□ 1.96
BRCA1P38398 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
BRCA1P38398 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC27.3■■□□□ 1.96
BRCA1P38398 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
BRCA1P38398 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC27.3■■□□□ 1.96
BRCA1P38398 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC27.3■■□□□ 1.96
BRCA1P38398 UQCRFS1P1-201ENST00000435169 820 ntBASIC27.3■■□□□ 1.96
BRCA1P38398 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC27.3■■□□□ 1.96
BRCA1P38398 DUSP8P4-201ENST00000399538 1761 ntBASIC27.3■■□□□ 1.96
BRCA1P38398 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC27.3■■□□□ 1.96
BRCA1P38398 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC27.3■■□□□ 1.96
BRCA1P38398 AF201337.1-201ENST00000520239 748 ntBASIC27.3■■□□□ 1.96
BRCA1P38398 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC27.3■■□□□ 1.96
BRCA1P38398 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC27.3■■□□□ 1.96
BRCA1P38398 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC27.29■■□□□ 1.96
BRCA1P38398 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
BRCA1P38398 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC27.29■■□□□ 1.96
BRCA1P38398 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
BRCA1P38398 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
BRCA1P38398 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC27.29■■□□□ 1.96
BRCA1P38398 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC27.29■■□□□ 1.96
BRCA1P38398 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC27.29■■□□□ 1.96
BRCA1P38398 SLC7A5P1-201ENST00000568957 537 ntBASIC27.29■■□□□ 1.96
BRCA1P38398 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC27.29■■□□□ 1.96
BRCA1P38398 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC27.29■■□□□ 1.96
BRCA1P38398 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
BRCA1P38398 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC27.28■■□□□ 1.96
BRCA1P38398 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC27.28■■□□□ 1.96
BRCA1P38398 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC27.28■■□□□ 1.96
BRCA1P38398 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC27.28■■□□□ 1.96
BRCA1P38398 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC27.28■■□□□ 1.96
BRCA1P38398 AC007322.1-201ENST00000426983 750 ntBASIC27.27■■□□□ 1.96
BRCA1P38398 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC27.27■■□□□ 1.96
BRCA1P38398 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC27.27■■□□□ 1.96
BRCA1P38398 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC27.27■■□□□ 1.96
BRCA1P38398 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC27.27■■□□□ 1.96
BRCA1P38398 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC27.27■■□□□ 1.96
BRCA1P38398 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
BRCA1P38398 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC27.27■■□□□ 1.96
BRCA1P38398 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC27.27■■□□□ 1.96
BRCA1P38398 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC27.27■■□□□ 1.96
BRCA1P38398 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC27.26■■□□□ 1.95
BRCA1P38398 PARP1-202ENST00000366792 553 ntTSL 3 BASIC27.26■■□□□ 1.95
BRCA1P38398 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
BRCA1P38398 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC27.26■■□□□ 1.95
BRCA1P38398 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
BRCA1P38398 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC27.26■■□□□ 1.95
BRCA1P38398 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC27.26■■□□□ 1.95
BRCA1P38398 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC27.26■■□□□ 1.95
BRCA1P38398 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
BRCA1P38398 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC27.25■■□□□ 1.95
BRCA1P38398 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC27.25■■□□□ 1.95
BRCA1P38398 ARL16-209ENST00000573715 763 ntTSL 3 BASIC27.25■■□□□ 1.95
BRCA1P38398 ARL16-211ENST00000576135 694 ntTSL 3 BASIC27.25■■□□□ 1.95
BRCA1P38398 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC27.25■■□□□ 1.95
BRCA1P38398 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC27.25■■□□□ 1.95
BRCA1P38398 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC27.25■■□□□ 1.95
BRCA1P38398 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC27.25■■□□□ 1.95
BRCA1P38398 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
BRCA1P38398 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC27.24■■□□□ 1.95
BRCA1P38398 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC27.24■■□□□ 1.95
BRCA1P38398 PRORSD1P-201ENST00000295112 541 ntBASIC27.24■■□□□ 1.95
BRCA1P38398 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC27.24■■□□□ 1.95
BRCA1P38398 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
BRCA1P38398 AC068587.7-201ENST00000641602 218 ntBASIC27.24■■□□□ 1.95
BRCA1P38398 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC27.24■■□□□ 1.95
BRCA1P38398 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC27.24■■□□□ 1.95
BRCA1P38398 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC27.24■■□□□ 1.95
BRCA1P38398 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC27.23■■□□□ 1.95
BRCA1P38398 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC27.23■■□□□ 1.95
BRCA1P38398 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC27.23■■□□□ 1.95
BRCA1P38398 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 PFKL-212ENST00000628044 129 ntTSL 3 BASIC27.23■■□□□ 1.95
BRCA1P38398 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC27.23■■□□□ 1.95
BRCA1P38398 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC27.23■■□□□ 1.95
BRCA1P38398 SHF-206ENST00000560471 2499 ntTSL 5 BASIC27.22■■□□□ 1.95
BRCA1P38398 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC27.22■■□□□ 1.95
BRCA1P38398 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC27.22■■□□□ 1.95
BRCA1P38398 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
BRCA1P38398 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC27.22■■□□□ 1.95
Retrieved 100 of 98,524 protein–RNA pairs in 58.4 ms