Protein–RNA interactions for Protein: P29353

SHC1, SHC-transforming protein 1, humanhuman

Predictions only

Length 583 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHC1P29353 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SHC1P29353 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC20.08■□□□□ 0.81
SHC1P29353 AC096631.2-201ENST00000436136 790 ntBASIC20.08■□□□□ 0.81
SHC1P29353 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC20.08■□□□□ 0.81
SHC1P29353 DUX4L4-201ENST00000566884 1269 ntBASIC20.08■□□□□ 0.81
SHC1P29353 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.08■□□□□ 0.81
SHC1P29353 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.08■□□□□ 0.81
SHC1P29353 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.07■□□□□ 0.8
SHC1P29353 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
SHC1P29353 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.07■□□□□ 0.8
SHC1P29353 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 GUSBP5-202ENST00000510805 1989 ntBASIC20.07■□□□□ 0.8
SHC1P29353 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 SERBP1P1-201ENST00000396021 1160 ntBASIC20.07■□□□□ 0.8
SHC1P29353 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.07■□□□□ 0.8
SHC1P29353 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.07■□□□□ 0.8
SHC1P29353 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.07■□□□□ 0.8
SHC1P29353 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SHC1P29353 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
SHC1P29353 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
SHC1P29353 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC20.07■□□□□ 0.8
SHC1P29353 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.06■□□□□ 0.8
SHC1P29353 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.06■□□□□ 0.8
SHC1P29353 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
SHC1P29353 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.06■□□□□ 0.8
SHC1P29353 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20.06■□□□□ 0.8
SHC1P29353 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC20.06■□□□□ 0.8
SHC1P29353 MIR3181-201ENST00000578512 73 ntBASIC20.06■□□□□ 0.8
SHC1P29353 pRNA.6-201ENST00000610482 90 ntBASIC20.06■□□□□ 0.8
SHC1P29353 pRNA.5-201ENST00000612139 90 ntBASIC20.06■□□□□ 0.8
SHC1P29353 AC110285.6-201ENST00000617652 491 ntBASIC20.06■□□□□ 0.8
SHC1P29353 pRNA.11-201ENST00000618423 90 ntBASIC20.06■□□□□ 0.8
SHC1P29353 pRNA.13-201ENST00000619112 90 ntBASIC20.06■□□□□ 0.8
SHC1P29353 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.06■□□□□ 0.8
SHC1P29353 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SHC1P29353 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
SHC1P29353 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC20.05■□□□□ 0.8
SHC1P29353 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHC1P29353 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHC1P29353 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.05■□□□□ 0.8
SHC1P29353 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHC1P29353 UNC93B3-201ENST00000308076 687 ntBASIC20.05■□□□□ 0.8
SHC1P29353 MTURN-203ENST00000409688 843 ntTSL 2 BASIC20.05■□□□□ 0.8
SHC1P29353 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC20.05■□□□□ 0.8
SHC1P29353 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
SHC1P29353 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
SHC1P29353 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC20.05■□□□□ 0.8
SHC1P29353 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
SHC1P29353 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 SYT6-210ENST00000641643 1587 ntBASIC20.04■□□□□ 0.8
SHC1P29353 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.04■□□□□ 0.8
SHC1P29353 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.04■□□□□ 0.8
SHC1P29353 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
SHC1P29353 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
SHC1P29353 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 AC092171.4-201ENST00000609130 632 ntBASIC20.03■□□□□ 0.8
SHC1P29353 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.03■□□□□ 0.8
SHC1P29353 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
SHC1P29353 LSR-203ENST00000360798 1963 ntTSL 2 BASIC20.03■□□□□ 0.8
SHC1P29353 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.02■□□□□ 0.8
SHC1P29353 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
SHC1P29353 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms