Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
PTPN4P29074 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.96■■□□□ 1.11
PTPN4P29074 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
PTPN4P29074 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN4P29074 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
PTPN4P29074 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
PTPN4P29074 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
PTPN4P29074 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN4P29074 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN4P29074 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.95■■□□□ 1.1
PTPN4P29074 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN4P29074 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
PTPN4P29074 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.95■■□□□ 1.1
PTPN4P29074 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC21.94■■□□□ 1.1
PTPN4P29074 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN4P29074 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.94■■□□□ 1.1
PTPN4P29074 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.94■■□□□ 1.1
PTPN4P29074 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
PTPN4P29074 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN4P29074 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN4P29074 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
PTPN4P29074 C11orf96-202ENST00000528572 1834 ntBASIC21.94■■□□□ 1.1
PTPN4P29074 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
PTPN4P29074 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
PTPN4P29074 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.93■■□□□ 1.1
PTPN4P29074 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC21.93■■□□□ 1.1
PTPN4P29074 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.93■■□□□ 1.1
PTPN4P29074 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.93■■□□□ 1.1
PTPN4P29074 MIR4466-201ENST00000606121 54 ntBASIC21.93■■□□□ 1.1
PTPN4P29074 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
PTPN4P29074 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN4P29074 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PTPN4P29074 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
PTPN4P29074 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.92■■□□□ 1.1
PTPN4P29074 TFPT-201ENST00000391757 774 ntTSL 5 BASIC21.92■■□□□ 1.1
PTPN4P29074 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN4P29074 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.92■■□□□ 1.1
PTPN4P29074 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC21.92■■□□□ 1.1
PTPN4P29074 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN4P29074 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN4P29074 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
PTPN4P29074 AF117829.1-207ENST00000504145 1572 ntTSL 3 BASIC21.91■■□□□ 1.1
PTPN4P29074 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.91■■□□□ 1.1
PTPN4P29074 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.91■■□□□ 1.1
PTPN4P29074 AL161729.1-201ENST00000604104 1402 ntBASIC21.91■■□□□ 1.1
PTPN4P29074 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC21.91■■□□□ 1.1
PTPN4P29074 SNX5-217ENST00000606557 1087 ntBASIC21.91■■□□□ 1.1
PTPN4P29074 MIR6722-201ENST00000617286 78 ntBASIC21.91■■□□□ 1.1
PTPN4P29074 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.91■■□□□ 1.1
PTPN4P29074 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.91■■□□□ 1.1
PTPN4P29074 AC092053.2-201ENST00000640557 1818 ntBASIC21.91■■□□□ 1.1
PTPN4P29074 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
PTPN4P29074 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN4P29074 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN4P29074 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN4P29074 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC21.9■■□□□ 1.1
PTPN4P29074 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
PTPN4P29074 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN4P29074 AL512631.2-201ENST00000604634 923 ntBASIC21.9■■□□□ 1.1
PTPN4P29074 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC21.9■■□□□ 1.1
PTPN4P29074 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.9■■□□□ 1.1
PTPN4P29074 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.9■■□□□ 1.1
PTPN4P29074 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.9■■□□□ 1.1
PTPN4P29074 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.9■■□□□ 1.1
PTPN4P29074 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.9■■□□□ 1.1
PTPN4P29074 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
PTPN4P29074 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.9■■□□□ 1.1
PTPN4P29074 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTPN4P29074 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTPN4P29074 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
PTPN4P29074 MIR935-201ENST00000401179 91 ntBASIC21.89■■□□□ 1.09
PTPN4P29074 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.89■■□□□ 1.09
PTPN4P29074 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.89■■□□□ 1.09
PTPN4P29074 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.89■■□□□ 1.09
PTPN4P29074 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN4P29074 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC21.89■■□□□ 1.09
PTPN4P29074 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
PTPN4P29074 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.89■■□□□ 1.09
PTPN4P29074 FBXW4P1-201ENST00000426721 2239 ntBASIC21.88■■□□□ 1.09
PTPN4P29074 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
PTPN4P29074 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms