Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL8A1P27658 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
COL8A1P27658 AC007322.1-201ENST00000426983 750 ntBASIC19.28■□□□□ 0.68
COL8A1P27658 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC19.28■□□□□ 0.68
COL8A1P27658 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.28■□□□□ 0.68
COL8A1P27658 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.28■□□□□ 0.68
COL8A1P27658 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC19.28■□□□□ 0.68
COL8A1P27658 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.28■□□□□ 0.68
COL8A1P27658 AC133041.1-202ENST00000642053 222 ntBASIC19.28■□□□□ 0.68
COL8A1P27658 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
COL8A1P27658 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.28■□□□□ 0.68
COL8A1P27658 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC19.28■□□□□ 0.68
COL8A1P27658 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
COL8A1P27658 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC19.27■□□□□ 0.68
COL8A1P27658 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.27■□□□□ 0.68
COL8A1P27658 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
COL8A1P27658 RNA5SP413-201ENST00000516373 109 ntBASIC19.27■□□□□ 0.68
COL8A1P27658 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC19.27■□□□□ 0.68
COL8A1P27658 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC19.27■□□□□ 0.68
COL8A1P27658 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.27■□□□□ 0.68
COL8A1P27658 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
COL8A1P27658 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
COL8A1P27658 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
COL8A1P27658 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC19.27■□□□□ 0.67
COL8A1P27658 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL8A1P27658 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
COL8A1P27658 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
COL8A1P27658 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.26■□□□□ 0.67
COL8A1P27658 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC19.26■□□□□ 0.67
COL8A1P27658 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC19.26■□□□□ 0.67
COL8A1P27658 DUX4L16-201ENST00000555130 1264 ntBASIC19.26■□□□□ 0.67
COL8A1P27658 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.26■□□□□ 0.67
COL8A1P27658 AC231657.2-201ENST00000624556 255 ntBASIC19.26■□□□□ 0.67
COL8A1P27658 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC19.26■□□□□ 0.67
COL8A1P27658 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
COL8A1P27658 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.26■□□□□ 0.67
COL8A1P27658 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
COL8A1P27658 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 ALDH1A3-203ENST00000557963 1670 ntBASIC19.25■□□□□ 0.67
COL8A1P27658 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC19.25■□□□□ 0.67
COL8A1P27658 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.25■□□□□ 0.67
COL8A1P27658 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.25■□□□□ 0.67
COL8A1P27658 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
COL8A1P27658 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.25■□□□□ 0.67
COL8A1P27658 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.25■□□□□ 0.67
COL8A1P27658 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC19.25■□□□□ 0.67
COL8A1P27658 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.25■□□□□ 0.67
COL8A1P27658 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
COL8A1P27658 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.24■□□□□ 0.67
COL8A1P27658 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL8A1P27658 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL8A1P27658 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.24■□□□□ 0.67
COL8A1P27658 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC19.24■□□□□ 0.67
COL8A1P27658 AL596275.1-201ENST00000423464 877 ntBASIC19.24■□□□□ 0.67
COL8A1P27658 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.24■□□□□ 0.67
COL8A1P27658 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
COL8A1P27658 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC19.24■□□□□ 0.67
COL8A1P27658 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.24■□□□□ 0.67
COL8A1P27658 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC19.24■□□□□ 0.67
COL8A1P27658 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL8A1P27658 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.23■□□□□ 0.67
COL8A1P27658 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC19.23■□□□□ 0.67
COL8A1P27658 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC19.23■□□□□ 0.67
COL8A1P27658 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
COL8A1P27658 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.23■□□□□ 0.67
COL8A1P27658 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL8A1P27658 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.23■□□□□ 0.67
COL8A1P27658 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.23■□□□□ 0.67
COL8A1P27658 SMUG1P1-201ENST00000590640 811 ntBASIC19.23■□□□□ 0.67
COL8A1P27658 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL8A1P27658 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
COL8A1P27658 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.23■□□□□ 0.67
COL8A1P27658 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
COL8A1P27658 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL8A1P27658 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.22■□□□□ 0.67
COL8A1P27658 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC19.22■□□□□ 0.67
COL8A1P27658 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
COL8A1P27658 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
COL8A1P27658 CD37-213ENST00000598095 1598 ntTSL 2 BASIC19.22■□□□□ 0.67
COL8A1P27658 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.22■□□□□ 0.67
COL8A1P27658 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
COL8A1P27658 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.21■□□□□ 0.67
COL8A1P27658 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.21■□□□□ 0.67
COL8A1P27658 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
COL8A1P27658 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms