Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC18.57■□□□□ 0.56
USF1P22415 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.57■□□□□ 0.56
USF1P22415 DUX4L4-201ENST00000566884 1269 ntBASIC18.57■□□□□ 0.56
USF1P22415 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC18.57■□□□□ 0.56
USF1P22415 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.57■□□□□ 0.56
USF1P22415 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC18.57■□□□□ 0.56
USF1P22415 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC18.57■□□□□ 0.56
USF1P22415 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
USF1P22415 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
USF1P22415 GRK4-204ENST00000503518 2136 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC18.56■□□□□ 0.56
USF1P22415 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.56■□□□□ 0.56
USF1P22415 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.56■□□□□ 0.56
USF1P22415 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
USF1P22415 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
USF1P22415 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 LHPP-203ENST00000392757 840 ntTSL 3 BASIC18.55■□□□□ 0.56
USF1P22415 CCDC92B-201ENST00000575506 885 ntBASIC18.55■□□□□ 0.56
USF1P22415 AC010525.1-201ENST00000585559 441 ntBASIC18.55■□□□□ 0.56
USF1P22415 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC18.55■□□□□ 0.56
USF1P22415 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
USF1P22415 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
USF1P22415 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
USF1P22415 LINC02228-203ENST00000641970 1355 ntBASIC18.55■□□□□ 0.56
USF1P22415 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC18.54■□□□□ 0.56
USF1P22415 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC18.54■□□□□ 0.56
USF1P22415 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.54■□□□□ 0.56
USF1P22415 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC18.54■□□□□ 0.56
USF1P22415 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 AP005435.1-201ENST00000529293 1178 ntBASIC18.54■□□□□ 0.56
USF1P22415 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.54■□□□□ 0.56
USF1P22415 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
USF1P22415 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC18.54■□□□□ 0.56
USF1P22415 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
USF1P22415 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.53■□□□□ 0.56
USF1P22415 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
USF1P22415 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
USF1P22415 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
USF1P22415 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC18.53■□□□□ 0.56
USF1P22415 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USF1P22415 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.53■□□□□ 0.56
USF1P22415 ABCB10P4-201ENST00000566803 2184 ntBASIC18.53■□□□□ 0.56
USF1P22415 NTF6G-201ENST00000591094 616 ntBASIC18.53■□□□□ 0.56
USF1P22415 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC18.53■□□□□ 0.56
USF1P22415 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
USF1P22415 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC18.52■□□□□ 0.56
USF1P22415 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 LINC01529-204ENST00000636474 1715 ntBASIC18.52■□□□□ 0.56
USF1P22415 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC18.52■□□□□ 0.56
USF1P22415 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.52■□□□□ 0.56
USF1P22415 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 KRT18P14-201ENST00000534205 1250 ntBASIC18.52■□□□□ 0.56
USF1P22415 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.52■□□□□ 0.56
USF1P22415 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
USF1P22415 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC18.52■□□□□ 0.56
USF1P22415 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC18.51■□□□□ 0.55
USF1P22415 MPST-204ENST00000404393 1329 ntTSL 5 BASIC18.51■□□□□ 0.55
USF1P22415 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
USF1P22415 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC18.51■□□□□ 0.55
USF1P22415 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
USF1P22415 AC004911.1-201ENST00000416316 871 ntBASIC18.51■□□□□ 0.55
USF1P22415 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.51■□□□□ 0.55
USF1P22415 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC18.51■□□□□ 0.55
USF1P22415 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
USF1P22415 AC092437.1-201ENST00000624794 1048 ntBASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms